Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq15845 107 3e-18 seq12034 105 9e-18 seq10790 105 9e-18 seq15170 104 3e-17 seq5879 104 3e-17 seq7530 100 4e-16 seq17817 93.3 6e-14 seq10899 87.8 2e-12 seq8967 87.8 2e-12 seq16058 86.0 8e-12 seq15839 86.0 8e-12 seq4501 82.4 1e-10 >seq15845 Length=360076 Score = 107 bits (118), Expect = 3e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| || Sbjct 43896 ATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 43837 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 43836 TCCCCGACGGGGAG 43823 Score = 104 bits (114), Expect = 3e-17 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 11720 TGTAACCCAG-TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCG 11777 ||| || ||| |||||||||||||||||||| |||| |||| ||||| | |||||||||| Sbjct 43563 TGTCACGCAGCTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCG 43622 Query 11778 GGGTTCGATTCCCCGACGAGGAGG 11801 |||||||||||||||||| ||||| Sbjct 43623 GGGTTCGATTCCCCGACGGGGAGG 43646 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 43574 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 43633 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 43634 CCCGACGGGGAG 43645 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 43894 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 43835 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 43834 CCCGACGGGGAGG 43822 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 43645 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 43586 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 43585 TACTAACGAGGA 43574 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 43823 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 43882 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 43883 TACTAACGAGGAATT 43897 >seq12034 Length=287844 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 194985 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 195044 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 195045 CCCCGACGGGGAG 195057 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 194986 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 195045 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 195046 CCCGACGGGGAG 195057 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 195058 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 194999 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 194998 ATACTAACGAGGA 194986 >seq10790 Length=1503029 Score = 105 bits (116), Expect = 9e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||| Sbjct 355540 AGTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 355599 Query 11787 TCCCCGACGAGGAGG 11801 ||||||||| ||||| Sbjct 355600 TCCCCGACGGGGAGG 355614 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 350497 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 350556 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 350557 CCCGACGGGGAG 350568 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 355539 TAGTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 355598 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 355599 TTCCCCGACGGGGAG 355613 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 350497 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 350556 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 350557 CCCGACGGGGAGG 350569 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 350568 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 350509 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 350508 TACTAACGAGGAT 350496 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 355613 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 355554 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 355553 TACTAACGAGGA 355542 >seq15170 Length=1256365 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709 |||| | |||||||||||||||||||| ||||| |||| |||| ||| ||||||||||| Sbjct 284561 TGCCCTTTTCCTCGTTAGTATAGTGGTAAGTATCCCCGCTTGTCACACAGGAGACCGGGG 284502 Query 8710 TTCGATTCCCCGACGAGGAG 8729 ||||||||||||||| |||| Sbjct 284501 TTCGATTCCCCGACGGGGAG 284482 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| |||| ||| ||||||||||||||||||| Sbjct 284553 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCTTGTCACACAGGAGACCGGGGTTCGATTC 284494 Query 11789 CCCGACGAGGAGGG 11802 ||||||| |||||| Sbjct 284493 CCCGACGGGGAGGG 284480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||| ||| ||||| |||||||| | ||||||| Sbjct 284482 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCTGTGTGACAAGCGGGGATACTTACCACTA 284541 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 284542 TACTAACGAGGA 284553 >seq5879 Length=159776 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 56900 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 56959 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 56960 CCCGACGGGGAG 56971 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 56900 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 56959 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 56960 CCCGACGGGGAGG 56972 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 56971 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 56912 Query 139413 TACTAACGAGGATTT 139427 ||||||||||||||| Sbjct 56911 TACTAACGAGGATTT 56897 >seq7530 Length=43377 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 24274 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 24333 Query 8717 CCCCGACGAGGAG 8729 ||||||| |||| Sbjct 24334 CCCCGACTGGGAG 24346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 24275 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 24334 Query 11789 CCCGACGAGGAG 11800 |||||| |||| Sbjct 24335 CCCGACTGGGAG 24346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| |||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 24347 ACTCCCAGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 24288 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 24287 ATACTAACGAGGA 24275 >seq17817 Length=295128 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 280732 TTCCTCGTTAGTATAGTGGCGAGTAT-CCCGCCTGTCACGTGGGAGACCGGGGTTCGATT 280790 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 280791 CCCCGACGGGGAG 280803 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/73 (89%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 280733 TCCTCGTTAGTATAGTGGCGAGTAT-CCCGCCTGTCACGTGGGAGACCGGGGTTCGATTC 280791 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 280792 CCCGACGGGGAGG 280804 >seq10899 Length=1044103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||| ||||||||||||| ||||| |||| ||||| ||| ||||||| ||||| |||| Sbjct 185331 TTCCTCATTAGTATAGTGGTGAGTATCCCCGCCTGTCACACAGGAGACCAGGGTTTGATT 185390 Query 8717 CCCCGACGAGGAG 8729 |||||| | |||| Sbjct 185391 CCCCGAAGGGGAG 185403 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||| ||||||||||||| ||||| |||| ||||| ||| ||||||| ||||| ||||| Sbjct 185332 TCCTCATTAGTATAGTGGTGAGTATCCCCGCCTGTCACACAGGAGACCAGGGTTTGATTC 185391 Query 11789 CCCGACGAGGAGGG 11802 ||||| | |||||| Sbjct 185392 CCCGAAGGGGAGGG 185405 >seq8967 Length=644763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8659 CCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 8718 |||| ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||||||| Sbjct 449147 CCTCATTAGTATAGTGGTGAGTATCCCCACCTGTCACGCGGGAGACCAGGGTTCGATTCC 449206 Query 8719 CCGACGAGGAG 8729 |||||| |||| Sbjct 449207 CCGACGGGGAG 449217 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11731 CCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 11789 |||| ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||||||| Sbjct 449147 CCTCATTAGTATAGTGGTGAGTATCCCCACCTGTCACGCGGGAGACCAGGGTTCGATTCC 449206 Query 11790 CCGACGAGGAGG 11801 |||||| ||||| Sbjct 449207 CCGACGGGGAGG 449218 >seq16058 Length=632134 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| ||| ||||| | ||||||||| ||||| ||||| Sbjct 100555 TCCTCGTTAGTATAGTGGTAAGTATCCCCACCTGTCACGCGGGAGACCAGGGTTTGATTC 100614 Query 8718 CCCGACGAGGAG 8729 |||||| |||| Sbjct 100615 CCCGACAGGGAG 100626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| ||| ||||| | ||||||||| ||||| ||||| Sbjct 100555 TCCTCGTTAGTATAGTGGTAAGTATCCCCACCTGTCACGCGGGAGACCAGGGTTTGATTC 100614 Query 11789 CCCGACGAGGAGG 11801 |||||| ||||| Sbjct 100615 CCCGACAGGGAGG 100627 >seq15839 Length=1352612 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 11789 |||||||||||||||||| ||||| || | ||||| | ||||||||| |||||||||||| Sbjct 126797 TCCTCGTTAGTATAGTGGGAGTATCCCTGCCTGTCACGCGGGAGACCAGGGTTCGATTCC 126738 Query 11790 CCGACGAGGAGGGAG 11804 | ||| |||| ||| Sbjct 126737 CTTACGGGGAGAGAG 126723 >seq4501 Length=249441 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCC--GTCTGTCGCACGGGAGACCGGGGTTCGA 8714 |||| |||||||||||||| ||||||||| | ||||| | ||||||||||||||||| Sbjct 27057 TTCCCTGTTAGTATAGTGGTGAGTATTCCCCCGCCTGTCACGTGGGAGACCGGGGTTCGA 26998 Query 8715 -TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 26997 TTTCCCCGACGGGGAG 26982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652667846416960