Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq11058 201 1e-46 seq12074 154 2e-32 seq4974 143 3e-29 seq20129 136 5e-27 >seq11058 Length=1707512 Score = 201 bits (222), Expect = 1e-46 Identities = 580/881 (66%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | ||| || |||| || ||||| || | || ||| Sbjct 1685994 ATCAAACTTGTTGGCAAATAAGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCAC 1686050 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 || ||||| ||||| || ||||| || | || ||||||| ||||| |||| || | Sbjct 1686051 ACCAAACACACACACAGAGCGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTT 1686110 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 |||||||| || | || |||||||| || || || | | ||| | |||||| || Sbjct 1686111 TGAAACATCCCCTTCAAAATAATGCCACTTCACAAATCTGGCAAGAGCATTCATGTCAGA 1686170 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || ||||||| |||| || | || || || || || | || | ||| || | || Sbjct 1686171 AACATCATACTTGT-CACTAGAAGAAACTGCCCCTGGGACTTCAGGGATTCTTTGAATAG 1686229 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 ||||||||| || ||| || || ||||| || || || | ||| || || || || || Sbjct 1686230 TAGCCCACAAGTATTCATCAGGGCTATAAGTGTCTTTAGCCCATTCAATAAATTCAAGGA 1686289 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | | | ||| | || || | ||| | ||| ||| || || || | Sbjct 1686290 TTTTGCTGTTTTCTAGCACATACTCTACAAATCTCCTACTAGCAACAAAATAGGCACTGC 1686349 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || || ||||| | | ||| || || | ||||||| ||| |||| || | Sbjct 1686350 CAGAGAAAACAGGTATACTAAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGCT 1686409 Query 162539 TTCCCTCTACGACCACGT-GTCTCTTCCTCCACCTGGCCATC-TTACTGGTAGACGGGTG 162596 | || || || | | | || | || |||| | | || || |||| || | | Sbjct 1686410 TACCATCAACAATTTCATAGTGT-TTTTTCCATC-GTATTTCTTTGCTGGAAGGCATTTT 1686467 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || || |||| ||||| |||| | ||| |||| | |||||| || | || Sbjct 1686468 CTCAGTTTCTAAGCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACCATTTCCTGGTT 1686527 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 |||||||| |||||||| | || || ||||| || | ||||||||| || || Sbjct 1686528 GGTCTTAATAGGAAAGTCCATACCACAAAGATTTATCAAATATTTCCAGTTTGTACTTCT 1686587 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 | ||| ||||| | | ||||| || || ||||| || | |||||||| || ||||| Sbjct 1686588 CCTGTAGAGATCTTTCATGCAGTTGAGGTCTGCCTGTACCCTGCTCCACGAAGCATACAC 1686647 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || |||||||| |||| | ||||||||| | |||||| || || || ||| | || Sbjct 1686648 TACACTCTCCAATTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAAC 1686707 Query 162837 GGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | | | |||| | || || | || | || || || | |||||| |||||| Sbjct 1686708 TG-CTGCCAGAAAAGTTTCTGG--AGACTTTTTGTCAACATGAATGCAGTAATAATTCTG 1686764 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| || ||||| | || || | ||| || | ||| ||||| || || | |||||| || Sbjct 1686765 AGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATACCACTAT 1686824 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 ||||| || || || || |||| || || |||||||| Sbjct 1686825 TGAATAGGCAATTGGAAATCCAGCTTCTTCTTTACTGAGAG 1686865 >seq12074 Length=2488088 Score = 154 bits (170), Expect = 2e-32 Identities = 402/599 (67%), Gaps = 23/599 (4%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 || || ||| | ||||| | | || | ||| |||||||||| ||| | || | ||| Sbjct 1147350 GCTAGCTCTCTTGGGGAGAGGAAATCTTCCACATGAATGAAAGAATCTGCTGGAATATAA 1147291 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| |||| || | ||| | ||||| | || |||| ||||| Sbjct 1147290 TTCTCATAGTTTTCTCTGGATGGGCCCAATACAACTGGTACAGATCCAGCCAGAAGAGCA 1147231 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| |||||||| ||||| || || |||| | ||||| ||||| | ||||| ||| Sbjct 1147230 TTGTAAAGTTTTTCAGTAATGTAATCTTTGTGGATTGAGTTTTCAAAGGACAGATAAAAT 1147171 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 ||||| | ||||||| | | || |||| | ||| | ||| ||||| | | | | Sbjct 1147170 TTACAAGTGGAGATAGTTG--GAATCAAGTTTTTATCATTCACATAGTCTCCAAATGCTT 1147113 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||| || ||| || || | | ||| || ||||| || || || || || | Sbjct 1147112 GCCCATAGGTATGGATTTCAGTATATTTGCTTAGCTCATTATAATA-CTTGACTCGAGCA 1147054 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || ||| |||||| || || || ||||| || || ||||| |||||||| ||| | Sbjct 1147053 TGCTCGGGGTTCCAGTTACTTACAACCCAACATACCAACTT-CTCTTTGCT----CGGCA 1146999 Query 177303 TTCGATACTAATGCA--GTGTCTC-TG--AGCGTTAGTGAT-CCATAGGGCACGTGAATA 177356 | | |||||| | | ||| || | | || ||| ||||| ||||| |||||| Sbjct 1146998 CTTCA----AATGCAAAGGGGCTCGTGCTAACCTTCATGAAGCCATAAGGCACTTGAATA 1146943 Query 177357 TCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAA 177415 || || || || | || || | || || ||||| |||| ||| || || | ||| Sbjct 1146942 TCTGAATCACGCCGATAAGTCAGGGTCAGGTTGAACAGGTGTTCAATGCCACTCTTTTGC 1146883 Query 177416 GGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGG 177475 || | ||| | | || || || ||||||||||| |||||||| || || | ||| || | Sbjct 1146882 GGAG-TGTGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTAGC 1146824 Query 177476 TTCCGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCAT 177534 || | ||||| | || |||| || || ||||||||||||| | ||||||| Sbjct 1146823 TTGCTGAGGTAAATTAGTGAGATCCCAGCTGATGTCTCTGTGGTGAATAAGGACGGCAT 1146765 >seq4974 Length=20907 Score = 143 bits (158), Expect = 3e-29 Identities = 183/250 (73%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 162736 CAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTG 162795 |||||||| || || ||||| || ||| || |||||||| || ||||||| ||||| Sbjct 15897 CAGTTCAGGTCCGCTTGGACCCGGGACCAGGATGCGTACACTACTCTCTCCAGTTTAGTG 15956 Query 162796 GCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCG 162853 || ||||||||||| ||||| || || | ||||| || ||| ||| | || Sbjct 15957 GCCACAAAGACATTTTCGAAGCAGGAGGCGATCCCTCGGACTGCCTCCTTGAATTCGTCC 16016 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || | |||| ||||||||| || ||||||| |||||| || | |||||||| ||| | Sbjct 16017 GGG--GATTTCAGATCTACGTGGACACAGTATATATTCTGGGGCGTGTAGATGGACCTTA 16074 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 ||||| ||||||||||| ||||| | || || || || ||||| || || || || | Sbjct 16075 ACAATCTTTCGAACATCTCAATCTTCTCATGCACTACCATGGAATATGCAATAGGAAAAT 16134 Query 162974 CAGCCTCCTC 162983 | ||||||| Sbjct 16135 CTTCCTCCTC 16144 >seq20129 Length=1749028 Score = 136 bits (150), Expect = 5e-27 Identities = 183/250 (73%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 162736 CAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTG 162795 |||||||| ||| | ||||| || ||| || |||||||| || ||||||| ||||| Sbjct 885447 CAGTTCAGGTCG-CTTGGACCCGGGACCAGGATGCGTACACTACTCTCTCCAGTTTAGTG 885389 Query 162796 GCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCG 162853 || ||||||||||| ||||| || || | ||||| || ||| ||| | || Sbjct 885388 GCCACAAAGACATT-TCGAAGCAGGAGGCGATCCCTCGGACTGCCTCCTTGAATTCGTCC 885330 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || | |||| ||||||||| || ||||||| |||||| || | |||||||| ||| | Sbjct 885329 GGG--GATTTCAGATCTACGTGGACACAGTATATATTCTGGGGCGTGTAGATGGACCTTA 885272 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 ||||| ||||||||||| ||||| | || || || || ||||| || || || || | Sbjct 885271 ACAATCTTTCGAACATCTCAATCTTCTCATGCACTACCATGGAATATGCAATAGGAAAAT 885212 Query 162974 CAGCCTCCTC 162983 | ||||||| Sbjct 885211 CTTCCTCCTC 885202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578275216006400