Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10790 98.7 2e-15 >seq10790 Length=1503029 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||| | ||||| || ||| Sbjct 361801 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGCGAC 361860 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| |||||||| ||| || ||| || Sbjct 361861 ACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAG 361920 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || |||| |||||| || Sbjct 361921 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATC 361980 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || ||||| ||| | || || | || ||| Sbjct 361981 CAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGA 362019 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||| | ||||| || ||| Sbjct 362029 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGCGAC 362088 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| |||||||| ||| || ||| || Sbjct 362089 ACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAG 362148 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || |||| |||||| || Sbjct 362149 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATC 362208 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || ||||| ||| | || || | || ||| Sbjct 362209 CAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGA 362247 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| |||||||| ||| || ||| || || || ||||| ||||||||| Sbjct 360070 AAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAG 360129 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || |||| |||||| |||||||||| || ||||| ||| Sbjct 360130 CAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCAC 360189 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || || | || ||| Sbjct 360190 TTGGTCCTGCGCCTCCGA 360207 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| |||||||| ||| || ||| || || || ||||| ||||||||| Sbjct 360748 AAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAG 360807 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || |||| |||||| |||||||||| || ||||| ||| Sbjct 360808 CAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCAC 360867 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || || | || ||| Sbjct 360868 TTGGTCCTGCGCCTCCGA 360885 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 || |||||| | ||||| |||||||| ||| || ||| || || || ||||| || Sbjct 362331 AAGGCAAAA--TCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGC 362388 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 |||||||||| |||||||||| | || || |||| |||||| |||||||||| || || Sbjct 362389 CGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCAC 362448 Query 206367 TCTTCACCTTGTTTTGAGACTTCGA 206391 ||| ||| | || || | || ||| Sbjct 362449 TCTGCACTTGGTCCTGCGCCTCCGA 362473 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||| | ||||| || ||| Sbjct 362483 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGCGAC 362542 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| |||||||| ||| || ||| || Sbjct 362543 ACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAG 362602 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || |||| |||||| || Sbjct 362603 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATC 362662 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 |||||||| || ||||| ||| Sbjct 362663 CAGAAAGAATCCACTCTGCAC 362683 Score = 95.1 bits (104), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || || ||||| ||||| | ||||| || Sbjct 359758 AAAATG---CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAG 359814 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| | || || ||| || || || || |||||||| ||| || Sbjct 359815 CCCAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCA 359874 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || ||||| |||||||||||| |||||||||| | || || |||| Sbjct 359875 GACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGAC 359934 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| |||||||||| || ||||| ||| | || || | || ||| Sbjct 359935 TACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGA 359982 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || ||||| |||||||| ||| || ||| || || || ||||| |||||||||||| Sbjct 361204 ATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAG 361263 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 |||||||||| | || || |||| |||||| |||||||||| || ||||| ||| | Sbjct 361264 CTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTG 361323 Query 206377 GTTTTGAGACTTCGA 206391 || || | || ||| Sbjct 361324 GTCCTGCGCCTCCGA 361338 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 206259 TCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTT 206318 || ||| |||||||| ||| || ||| || || || ||||| |||||||||||| | Sbjct 360525 TCCAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCT 360584 Query 206319 GGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| | || || |||| |||||| |||||||||| || ||||| ||| | || Sbjct 360585 GGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGT 360644 Query 206379 TTTGAGACTTCGA 206391 || | || ||| Sbjct 360645 CCTGCGCCTCCGA 360657 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 206259 TCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTT 206318 || ||| |||||||| ||| || ||| || || || ||||| |||||||||||| | Sbjct 361432 TCCAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCT 361491 Query 206319 GGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| | || || |||| |||||| |||||||||| || ||||| ||| | || Sbjct 361492 GGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGT 361551 Query 206379 TTTGAGACTTCGA 206391 || | || ||| Sbjct 361552 CCTGCGCCTCCGA 361564 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 206259 TCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTT 206318 || ||| |||||||| ||| || ||| || || || ||||| |||||||||||| | Sbjct 360299 TCCAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCT 360358 Query 206319 GGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| | || || |||| |||||| |||||||||| || ||||| ||| | || Sbjct 360359 GGAAGATGG-CGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGT 360417 Query 206379 TTTGAGACTTCGA 206391 || | || ||| Sbjct 360418 CCTGCGCCTCCGA 360430 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||| | ||||| || ||| Sbjct 360895 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGCGAC 360954 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| |||||||| ||| || ||| ||| Sbjct 360955 ACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAA 361014 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||||||| |||||||||| | || || |||| |||||| | Sbjct 361015 GG-CTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACAT- 361072 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || ||||| ||| | || || | || ||| Sbjct 361073 CAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGA 361111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181492459158964