Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10790 105 6e-18 seq16337 96.9 3e-15 >seq10790 Length=1503029 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 359976 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 359917 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 359916 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 359857 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||||| || | | || | || ||| | ||||| ||||| | || | Sbjct 359856 GTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGAT 359797 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 359796 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 359761 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 362013 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 361954 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 361953 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 361894 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||||| || | | || | || ||| | ||||| ||||| | || | Sbjct 361893 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGAT 361834 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 361833 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361798 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 362241 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 362182 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 362181 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 362122 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||||| || | | || | || ||| | ||||| ||||| | || | Sbjct 362121 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGAT 362062 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 362061 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362026 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || |||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 362697 AAACGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC 362638 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||| Sbjct 362637 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCT 362578 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || ||||| || | | || | || ||| | ||||| ||||| | || Sbjct 362577 TTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTG 362518 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| || |||| ||||| | || |||||||| Sbjct 362517 ATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362480 Score = 102 bits (112), Expect = 8e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 360651 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 360592 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 360591 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 360532 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || | ||||| || | | || | || ||| | ||||| || || | || | Sbjct 360531 GTCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGAT 360473 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 360472 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360437 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 360879 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 360820 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 360819 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 360760 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||||| || | | || | || ||| | ||||| || || | || | Sbjct 360759 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGAT 360700 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 360699 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 360201 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 360142 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 360141 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 360082 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||||| || | | || | || ||| | ||||| ||||| | || | Sbjct 360081 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTA-GGTGAT 360023 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| || ||| | || |||||||| Sbjct 360022 GGTTTTGCCCGTCA-AGGTTTCACAAAGATCTGCAT 359988 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 361332 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 361273 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 361272 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 361213 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || | ||| || | | || | || ||| | ||||| ||||| | || | Sbjct 361212 GTC-TTGGATTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGAT 361154 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 361153 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361118 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 361558 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 361499 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 361498 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 361439 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || | ||||| || | | || | || ||| | ||||| || || | || | Sbjct 361438 GTCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC-TCTAGGGTGAT 361381 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 361380 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| ||| ||||||||||| || ||| ||| Sbjct 361105 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGA-TGTTGTAGTCGGACAGGGTGCGCCC 361047 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | || || |||||||| ||||||||||| Sbjct 361046 ATCTTCCAGCTGCTTTCCGGCAAAGATCAG-CCTTGCTGGTCTGGAGGAATGCCTTCTTT 360988 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||||| || | | || | || ||| | ||||| ||||| | || | Sbjct 360987 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGAT 360928 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 360927 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 362467 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 362408 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 362407 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 362348 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || | |||| || | | || | || ||| | ||||| || || | || | Sbjct 362347 GTC-TTGGATTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC-TCTAGGGTGAT 362290 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | || |||||||| Sbjct 362289 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362254 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| | Sbjct 360424 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCA 360365 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||| ||||| || |||| | |||| || | ||| || |||||||| ||||||||||| Sbjct 360364 -TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 360306 Query 132028 ATC 132030 || Sbjct 360305 GTC 360303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || ||||| || |||||||||||| || ||| ||| Sbjct 361785 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 361726 Query 131968 ATCTTCGAGCTGTTTACCGGAA---TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||| Sbjct 361725 ATCTTCCAGCTGCTTTCCGGCAAGCAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTC 361666 Query 132025 TTTATCGGTAATTT 132038 ||| || | | ||| Sbjct 361665 TTTGTCTGGATTTT 361652 >seq16337 Length=344012 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | ||||||||||||||| || ||| ||||| || ||||| | Sbjct 239914 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 239973 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 ||||||||| ||| || | ||| ||| | |||||||| || ||||||||| Sbjct 239974 TGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGGTCCCGGTCTCG 240026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476482014534240