Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq19244 113 1e-21 seq18073 113 1e-21 seq7215 113 1e-21 seq6328 113 1e-21 seq6280 113 1e-21 seq9264 104 7e-19 seq3649 104 7e-19 seq13130 100 9e-18 seq10790 100 9e-18 seq4321 98.7 3e-17 seq1740 98.7 3e-17 seq8062 96.9 1e-16 seq5971 96.9 1e-16 seq865 96.9 1e-16 seq11933 93.3 1e-15 seq10708 91.5 5e-15 seq18069 89.7 2e-14 seq15817 89.7 2e-14 seq10756 89.7 2e-14 seq13158 87.8 6e-14 seq15819 82.4 2e-12 seq15091 82.4 2e-12 seq10581 80.6 8e-12 seq20610 78.8 3e-11 >seq19244 Length=277429 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 51541 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 51482 Query 2829 CCGGGCTTCAGC 2840 || ||||| ||| Sbjct 51481 CCAGGCTTTAGC 51470 Score = 113 bits (124), Expect = 1e-21 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 140711 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 140770 Query 2829 CCGGGCTTCA 2838 || ||||||| Sbjct 140771 CCAGGCTTCA 140780 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | Sbjct 38659 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAAATCTAAAGGTCCCTGGTTCAATC 38718 Query 2829 CCGGGCTTCAGC 2840 || ||||| ||| Sbjct 38719 CCAGGCTTTAGC 38730 >seq18073 Length=122226 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 17202 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAATC 17261 Query 2829 CCGGGCTTCAGC 2840 |||| ||||||| Sbjct 17262 CCGGACTTCAGC 17273 >seq7215 Length=111485 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 54977 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAATC 55036 Query 2829 CCGGGCTTCAGC 2840 |||| ||||||| Sbjct 55037 CCGGACTTCAGC 55048 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||| |||||||||| ||||||||||||||||||| ||||| |||||||| || ||| | Sbjct 35245 AAGTAACTCAGTTGGGCGAGCATTAGACTGAAGATCCAAAGGGCCCTGGTTTAATCCCAG 35186 Query 2833 GCTT 2836 ||| Sbjct 35185 CCTT 35182 >seq6328 Length=16299 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 8552 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAATC 8493 Query 2829 CCGGGCTTCAGC 2840 |||| ||||||| Sbjct 8492 CCGGACTTCAGC 8481 >seq6280 Length=48815 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 3191 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAATC 3250 Query 2829 CCGGGCTTCAGC 2840 |||| ||||||| Sbjct 3251 CCGGACTTCAGC 3262 >seq9264 Length=124767 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| | Sbjct 114208 GCTGAAGTAGCTCAGTTGGGCAAGCATTAGACTGAAGCTCTAAATGTCCCTGGTTCAATC 114149 Query 2829 CCGGGCTTCAGC 2840 || ||||||||| Sbjct 114148 CCAGGCTTCAGC 114137 >seq3649 Length=191651 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 71569 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTTAATC 71510 Query 2829 CCGGGCTTCAGC 2840 || || |||||| Sbjct 71509 CCAGGGTTCAGC 71498 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||| ||| | |||||||||||||||| |||| |||||||||| | Sbjct 62601 GCTGAAGTAGCTCAGTCAGGAAACTGTTAGACTGAAGATCTAGAGGTACCTGGTTCAATC 62542 Query 2829 CCGGGCTTCAGC 2840 || ||||| ||| Sbjct 62541 CCAGGCTTTAGC 62530 >seq13130 Length=273377 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| | Sbjct 47515 GCTGAAGTAGTTCAGTTGGGAAAGCATTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATC 47456 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 47455 CCAGGCTT 47448 >seq10790 Length=1503029 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 354941 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 355000 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 355001 CCCGGGTTTCGGC 355013 >seq4321 Length=623732 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 555683 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 555624 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 555623 CCGGGTTTCGGC 555612 >seq1740 Length=420309 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 391220 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 391161 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 391160 CCGGGTTTCGGC 391149 >seq8062 Length=121886 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | Sbjct 101918 GCTGAAGTAGCTCAGTTGGGTGAGTGCTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 101859 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 101858 CCAGGCTT 101851 >seq5971 Length=189185 Score = 96.9 bits (106), Expect = 1e-16 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| | Sbjct 139826 GCTGAAGTGACTCAGTTGGGAGAGCATTAGACTGAAAATCTAAAGGTCCCTGGGTCAATC 139885 Query 2829 CCGGGCTTCAG 2839 | |||||| || Sbjct 139886 CTGGGCTTTAG 139896 >seq865 Length=831568 Score = 96.9 bits (106), Expect = 1e-16 Identities = 64/70 (91%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGC--ATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| Sbjct 316596 AAGTAGCTCAGTTGGGAGAGCGCATTAGACTGAAAATCTAAAGGTCCCTGGTTCAATCCC 316655 Query 2831 GGGCTTCAGC 2840 ||||| ||| Sbjct 316656 AGGCTTTAGC 316665 >seq11933 Length=402456 Score = 93.3 bits (102), Expect = 1e-15 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 ||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||| ||| Sbjct 67084 TGAAGTAACTCAGTCGGGAGAGCATTAGACTGAAAATCTAGAGGTCCCTGGTTCAATCCC 67025 Query 2831 GGGCTT 2836 ||||| Sbjct 67024 AGGCTT 67019 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||| | Sbjct 199199 GCTGAAGTAGCTCAGTTGGGAAAGCATTAGACTGAAAATCTAGAGATTGCTGGTTCAATC 199258 Query 2829 CCGGGCTT 2836 || |||| Sbjct 199259 CCATGCTT 199266 >seq10708 Length=238332 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||||| | Sbjct 43541 GCTGAAGTAGTTCAGTTGGGTGAGTGCTAGACTGAAGATCTACAGGTCCCTGGTTCAATC 43600 Query 2829 CCGGGCTT 2836 |||||||| Sbjct 43601 CCGGGCTT 43608 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||| |||||| |||| |||||||||||| ||||||||| ||||| | Sbjct 23817 GCTGAAGTAGCTCAGTCAGGAGAGGATTATACTGAAGATCTAGAGGTCCCTGATTCAATC 23758 Query 2829 CCGGGCTT 2836 || | ||| Sbjct 23757 CCAGTCTT 23750 >seq18069 Length=174772 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||| | Sbjct 106118 GCTGAAGTATCTCAGTGGGGAGAGTGTTAGACTGAAGATCTAAAGAGCCCTAGTTCAATC 106059 Query 2829 CCGGGCTTCAGC 2840 || ||||||||| Sbjct 106058 CCAGGCTTCAGC 106047 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||||||| |||||||||||||| ||||| |||||||||| ||| |||||||||| Sbjct 14472 GCTGAAGTAGTTCAGTTGGGAGAGCGTTAGAGTGAAGATCTAGAGGGCCCTGGTTCA 14528 >seq15817 Length=127387 Score = 89.7 bits (98), Expect = 2e-14 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| | Sbjct 84536 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAGAGGTCCCTGCTTCAATC 84477 Query 2829 CC 2830 || Sbjct 84476 CC 84475 >seq10756 Length=190496 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| | Sbjct 146194 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGGAGGTCACTGGTTCAATC 146135 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| Sbjct 146134 TTAGGCTTTAGC 146123 >seq13158 Length=154028 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||| Sbjct 33238 AAGTAGCTCAGTTGGGAGAGCGTTAGATCGAAGATCTAGAGGTCCCTGGTTCAATCCCAA 33297 Query 2833 GCTTCAGC 2840 |||| ||| Sbjct 33298 GCTTTAGC 33305 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||| | |||| ||| |||||||||||||||| || |||||||||||| | Sbjct 147622 GCTGAAGTAGCTCACTCGGGAAAGCGTTAGACTGAAGATCTAGAGATCCCTGGTTCAATC 147563 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 147562 CCAGGCTT 147555 >seq15819 Length=238824 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| |||||||||| |||| || ||||||||| || | Sbjct 75448 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAAATCTGGAGATCCCTGGTTTAATC 75389 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 75388 CCAGGCTT 75381 >seq15091 Length=133088 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||| ||| || ||||||||||||||||| ||||| ||||||||| | Sbjct 14172 GCTGAAGTAGCTCAGTCAGGAAAGTATTAGACTGAAGATCTAGAGGTCTCTGGTTCAATC 14231 Query 2829 CCGGGCTT 2836 || || || Sbjct 14232 CCAGGTTT 14239 >seq10581 Length=1121298 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||||||||||||||||| ||| |||||||||| ||||||||||||||||| || | Sbjct 822041 GCCGAAGTAGCTCAGTTGGGCGAGTGCTAGACTGAAGTTCTAAAGGTCCCTGGTTTAATC 822100 Query 2829 CCGGGCTTCAGC 2840 || || | |||| Sbjct 822101 CCAGGTTACAGC 822112 >seq20610 Length=414132 Score = 78.8 bits (86), Expect = 3e-11 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGG 2821 ||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct 206381 GCTGAAGTAGCTCAGATGGGACAGCATTAGACAGAAGATCTGAAGGTCCCTGG 206329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15845840970180