Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6255 174 2e-37 seq15516 123 4e-22 seq17637 118 2e-20 seq6109 107 3e-17 seq2421 102 1e-15 seq20404 87.8 3e-11 >seq6255 Length=103889 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 30572 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 30519 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 30518 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 30459 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 30458 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 30399 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 30398 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 30348 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 57511 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 57564 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 57565 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 57624 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 57625 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 57684 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 57685 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 57735 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 66166 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 66219 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 66220 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 66279 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 66280 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 66339 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 66340 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 66390 Score = 170 bits (188), Expect = 3e-36 Identities = 178/231 (77%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 23635 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 23582 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 23581 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 23522 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 23521 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCG-GAGATCCAGACCGCCGTGC 23463 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 23462 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 23412 >seq15516 Length=840103 Score = 123 bits (136), Expect = 4e-22 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC-CTCCAACAAGTCC 724970 ||||| ||||||| |||||||| |||||| |||| |||| || | | ||| || Sbjct 336192 TCTACCAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATCTCTTCTA-AAG-CC 336244 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||| ||||| |||| |||| | ||||| | Sbjct 336245 ATGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGTGCATTGCTGGGGAGGCATCT 336304 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| || ||| | ||||||||| ||| ||| | | | |||||||||||||||||| Sbjct 336305 CGCTTGACGCATTATAACAAGCGCTCCACCATCACCTCCCAAGAGATCCAGACCGCCGTG 336364 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| | ||||||| |||||| | || |||||||||| Sbjct 336365 CGCCTGCTGCTGCCCGGGGCGCTGGCCAAACACGCCATGTCGGAGGGCACCA 336416 >seq17637 Length=170933 Score = 118 bits (130), Expect = 2e-20 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| ||||| || || | | || ||||| | ||| ||| Sbjct 70505 AAGGCCATGAGCATCATGAACTCCTTTGTGAATGATGTCTTTGAGCGCATTGCCACAGAG 70564 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| ||||| || | | |||||||||| ||| ||| || |||||| | ||||| Sbjct 70565 GCCTCGCGCCTAGCACAATACAACAAGCGCTCCACCATCACCAGCCGCGAGGTGCAGACT 70624 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| |||||| | ||| || || ||||||| ||||||||| || |||||||||| Sbjct 70625 GCCGTCCGCCTGCTGCTGCCGGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 70682 >seq6109 Length=206988 Score = 107 bits (118), Expect = 3e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| |||||||||||| ||||| |||||||| |||| ||||| | || || Sbjct 53818 CCATGGGGATCATGAACTCCTTTGTGAACGACATCTTCGAGCGCATTGCGGGGGAAGCGT 53877 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||||||||| | | ||||||||| || ||| | || |||||||||||||| | Sbjct 53878 CTCGCCTGGCTCATTACAACAAGCGTTCAACCATCACTTCCCGGGAGATCCAGACCGCTG 53937 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| | ||| || || ||||||| || || || || |||||||||| Sbjct 53938 TGCGCCTGCTTCTGCCGGGGGAGCTGGCCAAACATGCTGTGTCTGAGGGCACCA 53991 Score = 107 bits (118), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| || || || ||||| |||| | ||| ||| ||| ||||| Sbjct 102550 TACAAAGTGCTGAAACAAGTTCACCCGGACACCGGT-----ATC-TCCTCTAAGGCCATG 102497 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||| || || |||||||| |||| ||||| | || || |||| Sbjct 102496 GGGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCGGGGGAAGCATCTCGC 102437 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | ||||||||| || ||| | || |||||||||||||| |||||| Sbjct 102436 CTGGCTCATTACAACAAGCGTTCAACTATCACTTCCCGGGAGATCCAGACCGCTGTGCGC 102377 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| || || || || |||||||||| Sbjct 102376 CTGCTTCTGCCGGGGGAGCTGGCCAAACATGCTGTGTCTGAGGGCACCA 102328 >seq2421 Length=294030 Score = 102 bits (112), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| |||||||||||| ||||| |||||||| |||| || |||| || || Sbjct 39602 CCATGGGGATCATGAACTCCTTTGTAAACGACATCTTCGAACGTATCGCTGGGGAAGCGT 39661 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| |||| | | |||||||||| || ||| | || |||||||||||||| | Sbjct 39662 CTCGTTTGGCACATTACAACAAGCGCTCGACCATCACTTCTCGGGAGATCCAGACCGCTG 39721 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| | ||| || || ||||||| || || || || |||||||||| Sbjct 39722 TGCGCCTGCTTTTGCCGGGGGAGCTGGCCAAACATGCGGTGTCTGAGGGCACCA 39775 Score = 96.9 bits (106), Expect = 5e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| |||||||||||| ||||| |||||||| |||| || |||| ||| Sbjct 3243 AAGGCCATGGGGATCATGAACTCCTTTGTGAACGACATCTTCGAGCGTATCGCAGGGGAG 3184 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| ||||||| | |||||||||| || ||| | || ||||| |||||| Sbjct 3183 GCGTCTCGTCTGGCGCATTACAACAAGCGCTCGACTATCACTTCCCGGGAGATTCAGACC 3124 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| | ||| ||||| | |||| ||||| || || |||||||| Sbjct 3123 GCTGTAAGACTGCTGCTGCCGGGCGAGTTAGCCAAACACGCGGTGTCTGAGGGCAC 3068 >seq20404 Length=409318 Score = 87.8 bits (96), Expect = 3e-11 Identities = 167/245 (68%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| | | ||||||||||| | |||||||| || || || |||| Sbjct 300206 TCTTACTCGATTTATGTCTACAAGGTGTTGAAGCAGGTCCATCCGGACAC----GGGCAT 300151 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | || | |||| ||||| || ||||| || || || | ||| | |||| |||||| Sbjct 300150 TTCTTC--CAAGGCCATGAGTATTATGAATTCCTTCGTGAGCGATCTCTTCGAGCGCATC 300093 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | ||||| ||| |||| | ||||||| | || || || | | ||| Sbjct 300092 GCCTCAGAGGCGTCCCGCTTGGCTTTATACAACAAGAGATCGACTATTAGCTCCAGAGAG 300033 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||| ||||||||| || ||| || || ||||| | ||| || || || || Sbjct 300032 ATCCAGACCGCGGTGCGCCTGCTCTTGCCTGGAGAGCTGGCGAAGCATGCTGTGTCGGAA 299973 Query 725136 GGCAC 725140 ||||| Sbjct 299972 GGCAC 299968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175719738344808