Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15322 131 1e-25 seq14676 109 4e-19 seq12452 91.5 1e-13 seq763 86.0 5e-12 >seq15322 Length=929654 Score = 131 bits (144), Expect = 1e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| ||||| ||||| ||| | || |||||||| ||| |||||||||||||| Sbjct 719554 ATGGCTTTGCCTCCTTGCCATGCTCTGTGCCAGTTTTATGTTCTAAATGGTGAACTGTCT 719495 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||||||| ||||| || ||||||||||| ||||| || || || || || || Sbjct 719494 TGCCAGTTGTATCAGAGATCTGGAGACATGGGACTGGGGGTGCCTTTCAATATCGCCAGC 719435 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | |||||||| ||||||||||| || || || Sbjct 719434 TATTCACTGCTCACATATATGATTGCCCATGTCAC 719400 >seq14676 Length=200364 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || | |||||||| ||||| ||||| || || ||||| || ||||| Sbjct 111706 CAAGAAGTACAGGTAACGGAAGCACGCTGTTTCTATGGCTTCCAGATTGCTATGGAAAAC 111765 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || |||||||| ||||| |||||| Sbjct 111766 ATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACATTAAAGAT 111813 >seq12452 Length=479537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 134244 AAAATCCTTTTGATTTCATGGAGAATATTTCACTGGAAGGAAAAACAAATTTCTTTGAGA 134185 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATA---ACAAGTGACAATAAATTTA 44609 | || ||| ||| |||||||| | | || ||| | |||| |||||| || | Sbjct 134184 AGCGGGTTTCAGAGTATCAGCGCTTTGCAGTTATGGCAGAAACAACAGACAATGTTTTCA 134125 Query 44610 CTACGGATGAAGATTTCTAAT 44630 | ||||| ||||||||||| Sbjct 134124 CACTGGATGCAGATTTCTAAT 134104 >seq763 Length=233445 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 47230 AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAAC 47289 |||||| ||| | ||||| || ||| || ||||||| || || |||||||| |||||||| Sbjct 50840 AGGACTGTATAAGAAATCTGGTAAACTAGTATTTCTTGGATTGGACAATGCTGGAAAAAC 50899 Query 47290 GGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATCC 47349 || | || |||||||||||| | | | || | | ||| ||||||||||||||| Sbjct 50900 TACACTGCTGCACATGCTCAAAGATGACAGACTGGGACAACATGTCCCTACATTACATCC 50959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397350962812420