Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq6147 125 7e-24 seq7210 123 3e-23 seq17800 122 9e-23 seq14935 111 2e-19 seq1968 105 7e-18 seq4419 96.9 4e-15 >seq6147 Length=132482 Score = 125 bits (138), Expect = 7e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 13233 GCTGTCTGCCAAGATGTCTGGATCGGGCACCTGGGGAAGTGTTACTATTTTTCAGAGGCT 13292 |||||||||| ||| | |||| || || ||||||||||| ||||||||| || |||||| Sbjct 111728 GCTGTCTGCCCAGAGGGCTGGGTCAGGTACCTGGGGAAGCATTACTATTTCTCCGAGGCT 111669 Query 13293 GAAGGAAACTGGACTCACGGGCAAAGCCAGTGTTTTGCCCTCGGTGCCTCCCTGGTGGGG 13352 || |||||||| || | || ||| | || | ||| |||||||||||||||| | Sbjct 111668 AGAGCAAACTGGAACTACAGTCAGAGCAACTGCTCTGCGCTCGGTGCCTCCCTGGCTACG 111609 Query 13353 ATTGACAGCCAGCAGGAAATGG 13374 ||||||| |||||||||||||| Sbjct 111608 ATTGACACCCAGCAGGAAATGG 111587 Score = 116 bits (128), Expect = 4e-21 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 13477 GGTTTCCTATAGCGGGAGGAGGATTATGTGCTTTTCTGAACAGAGGCGAAGTTTCTAGTT 13536 ||||||| || || ||||||| | ||||||||||||||| ||| ||| | |||| Sbjct 109762 GGTTTCCAATCGCAGGAGGAGAACATTGTGCTTTTCTGAACCACAACGACGTTGCCAGTT 109703 Query 13537 CAGGCTGCTGGAGGAACGCACGCTGGGTCTGCAGCAAAGCAGCAGAGAAACCAACAGGCA 13596 || | |||| || || || ||| ||||||||||| |||| ||||||||| |||| Sbjct 109702 CAAGATGCTCTAGAGACACATATTGGATCTGCAGCAAACCAGCGGAGAAACCAGAAGGCC 109643 Query 13597 GGGCAAAGTGAC--TGACCCGGAAGAGTCAGGCCTCGTCCCGTCAATG 13642 | |||||||||| ||||| ||| ||||| ||||| |||| || ||| Sbjct 109642 GAGCAAAGTGACTGTGACCTGGATGAGTCGGGCCTTGTCCTTTCCATG 109595 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 13370 AATGGATTTCCTGATGCGCTACAAAGGACTCTCTGATCACTGGATCGGCCTCGGGAGGGA 13429 || |||||||||||||| ||| ||||| | |||||| |||||||||||| |||||| Sbjct 110103 AAAGGATTTCCTGATGCTCTATAAAGGCCCCTCTGACTTTTGGATCGGCCTCCAGAGGGA 110044 Query 13430 ACCTGACCAACCCTGGATGTGGACAAATAACACCGAATTCAACAATTGGT 13479 ||| ||||| ||||||| ||| | | | ||||||||||||||| |||| Sbjct 110043 ACCGGACCAGCCCTGGAAATGGGCCAGTGGCACCGAATTCAACAAGTGGT 109994 >seq7210 Length=134718 Score = 123 bits (136), Expect = 3e-23 Identities = 115/142 (81%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 13477 GGTTTCCTATAGCGGGAGGAGGATTATGTGCTTTTCTGA---ACAGAGGCGAAGTTTCTA 13533 ||||||| |||||||||| |||| || | |||||||| ||| |||| | || | | Sbjct 19353 GGTTTCCAATAGCGGGAGAAGGACCGTGGGTTTTTCTGAGCCACA-AGGCTA--TTGCGA 19409 Query 13534 GTTCAGGCTGCTGGAGGAACGCACGCTGGGTCTGCAGCAAAGCAGCAGAGAAACCAACAG 13593 |||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||| || Sbjct 19410 GTTCAGGCTGCTCCAGGGACGCACGCTGGATCTGCAGCAAAGCAGCGGAGAAACCAGAAG 19469 Query 13594 GCAGGGCAAAGTGACTG-ACCC 13614 || | |||||||| ||| |||| Sbjct 19470 GCCGAGCAAAGTGCCTGTACCC 19491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 13373 GGATTTCCTGATGCGCTACAAAGGACTCTCTGATCACTGGATCGGCCTCGGGAGGGAACC 13432 |||||||||||||||||| ||||| | |||||| ||||||||| ||||| ||||||||| Sbjct 19024 GGATTTCCTGATGCGCTATAAAGGTCCCTCTGACCACTGGATCCGCCTCCGGAGGGAACT 19083 Query 13433 TGACCAACC 13441 ||||| || Sbjct 19084 GGACCAGCC 19092 >seq17800 Length=206751 Score = 122 bits (134), Expect = 9e-23 Identities = 129/168 (77%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 13477 GGTTTCCTATAGCGGGAGGAGGATTATGTGCTTTTCTGAACAGAGGCGAAGTTTCTAGTT 13536 ||||||| |||| ||||||||| | ||||||||| || | | | | || | |||| Sbjct 144059 GGTTTCCAATAGTGGGAGGAGGCCTGTGTGCTTTTGCGAGCCACGAGGTA-TTGCGAGTT 144001 Query 13537 CAGGCTGCTGGAGGAACGCACGCTGGGTCTGCAGCAAAGCAGCAGAGAAACCAACAGGCA 13596 ||||||||| ||| |||||| |||| |||||||||||||||| ||||||||| |||| Sbjct 144000 CAGGCTGCTCCAGGGACGCACACTGGATCTGCAGCAAAGCAGCGGAGAAACCAGAAGGCC 143941 Query 13597 GGGCAAAGTGAC--TGACCCGGAAGAGTCAGGCCTCGTCCCGTCAATG 13642 | |||||||||| ||||| || ||||| | | | |||| || ||| Sbjct 143940 GAGCAAAGTGACTTTGACCTGGGTGAGTCGGACGTTGTCCTTTCGATG 143893 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13380 CTGATGCGCTACAAAGGACTCTCTGATCACTGGATCGGCCTCGGGAGGGAACCTGACCAA 13439 ||| ||||||| ||||||| | ||| || |||| |||||| |||||||||| |||||| Sbjct 144390 CTGCTGCGCTATAAAGGACGCCTTGACCATGGGATTGGCCTCTGGAGGGAACCGGACCAA 144331 Query 13440 CCCTGGATGTGGACAAATAACACCGAATTCAACAA 13474 |||||||||||||| ||| ||||||||||||||| Sbjct 144330 CCCTGGATGTGGACCAATGGCACCGAATTCAACAA 144296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 13380 CTGATGCGCTACAAAGGACTCTCTGATCACTGGATCGGCCTCGGGAGGGAACCTGACCAA 13439 ||| ||| ||| ||||||| | ||| || |||| |||||| ||||||||| |||||| Sbjct 71972 CTGCTGCACTATAAAGGACGCCTTGACCATGGGATTGGCCTCTGGAGGGAACTGGACCAA 72031 Query 13440 CCCTGGATGTGGACAAATAACACCGAATTCAAC 13472 ||||||||||| || ||| ||| ||||||||| Sbjct 72032 CCCTGGATGTGCACCAATGGCACTGAATTCAAC 72064 >seq14935 Length=902093 Score = 111 bits (122), Expect = 2e-19 Identities = 119/156 (76%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 13214 TGAACCGTGTCCAGCTCGTGCTGTCTGCCAAGATGTCTGGATCGGGCACCTGGGGAAGTG 13273 ||| |||| |||| ||| | ||| || |||| |||||||||| || ||||| || Sbjct 307930 TGAGCCGT-TCCACCTCCTCATGTGTG----GATGGCTGGATCGGGTACAGAGGGAAATG 307876 Query 13274 TTACTATTTTTCAGAGGCTGAAGGAAACTGGACTCACGGGCAAAGCCAGTGTTTTGCCCT 13333 |||||||| |||||||||||||| |||||||| || | || | | || | | |||| Sbjct 307875 CTACTATTTCTCAGAGGCTGAAGGGAACTGGACCTACAGCCAGAATAATTGCTCTTCCCT 307816 Query 13334 CGGTGCCTCCCTGGTGGGGATTGACAGCCAGCAGGA 13369 |||||||||||||| | |||||||| || |||||| Sbjct 307815 CGGTGCCTCCCTGGCTGTGATTGACACCCGGCAGGA 307780 Score = 100 bits (110), Expect = 3e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 13233 GCTGTCTGCCAAGATGTCTGGATCGGGCACCTGGGGAAGTGTTACTATTTTTCAGAGGCT 13292 ||||| ||| ||| | |||| ||||| | ||||| ||||||||||| |||||||| Sbjct 572653 GCTGT-TGCTCAGACGGCTGGGTCGGGTATGGAGGGAAATGTTACTATTTCTCAGAGGCC 572595 Query 13293 GAAGGAAACTGGACTCACGGGCAAAGCCAGTGTTTTGCCCTCGGTGCCTCCCTGGTGGGG 13352 ||||| |||||||| || | | ||| | || | ||||||| |||||||||| ||| Sbjct 572594 GAAGGGAACTGGACCTACAGCCGGAGCAACTGCTCCTCCCTCGGCGCCTCCCTGGCTGGG 572535 Query 13353 ATTGACAGCCAGCAGGAAATGG 13374 || ||||| ||| |||||||| Sbjct 572534 ATCGACAGTGAGCCGGAAATGG 572513 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13239 TGCCAAGATGTCTGGATCGGGCACCTGGGGAAGTGTTACTATTTTTCAGAGGCTGAAGGA 13298 |||| || | |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct 328613 TGCCCTGACGGCTGGGTCGGGTACCTGGGGAAATGTTACTATTTCTCAGAGGCCGAAGGA 328672 Query 13299 AACTGGACTCACGGGCAAAGCCAGTGTTTTGCCCTCGGTGCCTCCCTGGTGGGGATTGAC 13358 |||||||| | | || ||| | || | || |||| |||||||||| ||| ||| Sbjct 328673 AACTGGACCTTCAGCCAGAGCAACTGCTCCTCCTTCGGCGCCTCCCTGGCTACGATCGAC 328732 Query 13359 AGCCAGCAGGAAATGG 13374 | || || |||| || Sbjct 328733 ACCCTGCCTGAAAAGG 328748 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 13250 CTGGATCGGGCACCTGG--GGAAGTGTTACTATTTTTCAGAGGCTGAAGGAAACTGGACT 13307 |||| ||||| | ||| |||| || |||||||| |||||||| | || |||||||| Sbjct 525065 CTGGGTCGGGTA--TGGAAGGAAATGCTACTATTTCTCAGAGGCCGGAGAAAACTGGAAC 525008 Query 13308 CACGGGCAAAGCCAGTGTTTTGCCCTCGGTGCCTCCCTGGTGGGGATTGACAGCCAGCAG 13367 || | || ||| | || | || ||||||||||||||| | ||| |||| ||||||| Sbjct 525007 AACAGCCAGAGCAACTGCTCCTCCTTCGGTGCCTCCCTGGCTGCGATCGACACCCAGCAG 524948 Query 13368 GAAATGG 13374 ||||||| Sbjct 524947 GAAATGG 524941 >seq1968 Length=19251 Score = 105 bits (116), Expect = 7e-18 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 13380 CTGATGCGCTACAAAGGACTCTCTGATCACTGGATCGGCCTCGGGAGGGAACCTGACCAA 13439 ||| ||||||| ||||||| | ||| || |||| |||||| |||||||||| |||||| Sbjct 12655 CTGCTGCGCTATAAAGGACGCCTTGACCATGGGATTGGCCTCTGGAGGGAACCGGACCAA 12596 Query 13440 CCCTGGATGTGGACAAATAACACCGAATTCAACAA 13474 |||||||||||||| ||| ||||||||||||||| Sbjct 12595 CCCTGGATGTGGACCAAT-GCACCGAATTCAACAA 12562 >seq4419 Length=29384 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13239 TGCCAAGATGTCTGGATCGGGCACCTGGGGAAGTGTTACTATTTTTCAGAGGCTGAAGGA 13298 |||| || | |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct 98 TGCCCTGACGGCTGGGTCGGGTACCTGGGGAAATGTTACTATTTCTCAGAGGCCGAAGGA 157 Query 13299 AACTGGACTCACGGGCAAAGCCAGTGTTTTGCCCTCGGTGCCTCCCTGGTGGGGATTGAC 13358 |||||||| | | || ||| | || | || |||| |||||||||| ||| ||| Sbjct 158 AACTGGACCTTCAGCCAGAGCAACTGCTCCTCCTTCGGCGCCTCCCTGGCTACGATCGAC 217 Query 13359 AGCCAGCAGGAAATGG 13374 | || || |||| || Sbjct 218 ACCCTGCCTGAAAAGG 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512878546579520