Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020
16-09-20] 21,684 sequences; 2,439,754,582 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq10790 111 1e-19
>seq10790
Length=1503029
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 362012 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361953
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 361952 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361893
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || |||||||| || ||
Sbjct 361892 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 361833
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 361832 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 361797
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 362240 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 362181
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 362180 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 362121
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || |||||||| || ||
Sbjct 362120 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 362061
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 362060 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 362025
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089
|| |||| ||||| || | || || ||||| || || ||||||||| || | |||||
Sbjct 362697 AAACGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC 362638
Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149
| ||||| ||||| || ||||| | || || | ||| || || || || | || |||
Sbjct 362637 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCT 362578
Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209
|| || ||| ||| || | | || | ||||| ||| || |||||||| ||
Sbjct 362577 TTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTG 362518
Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | ||||||||||| |||||||||||||| ||||||
Sbjct 362517 ATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 362479
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 359975 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 359916
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 359915 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 359856
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || |||||||| || ||
Sbjct 359855 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 359796
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| ||||||||||| |||||||||||||| |||||
Sbjct 359795 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 359761
Score = 107 bits (118), Expect = 2e-18
Identities = 154/216 (71%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 360650 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360591
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 360590 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360531
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| | ||| ||| || | | || | ||||| ||| || || ||||| || ||
Sbjct 360530 TCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 360472
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 360471 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 360436
Score = 107 bits (118), Expect = 2e-18
Identities = 154/216 (71%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 361331 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361272
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 361271 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361212
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || |||||||| || ||
Sbjct 361211 TCTTGGAT-TTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 361153
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 361152 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 361117
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 360878 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360819
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 360818 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360759
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || || ||||| || ||
Sbjct 360758 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 360699
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 360698 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 360663
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 360200 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360141
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 360140 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360081
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || |||||||| || ||
Sbjct 360080 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAG-GTGATG 360022
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| || |||||||||||| ||||||
Sbjct 360021 GTTTTGCCCGTCA-AGGTTTCACAAAGATCTGCATA 359987
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 361557 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361498
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 361497 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361438
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| | ||| ||| || | | || | ||||| ||| || ||| |||| || ||
Sbjct 361437 TCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTGATG 361380
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 361379 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 361344
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| ||| | ||||||||| || | ||||| |
Sbjct 361104 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGA-TGTTGTAGTCGGACAGGGTGCGCCCA 361046
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | || || || || || | || |||||
Sbjct 361045 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCT-TGCTGGTCTGGAGGAATGCCTTCTTTG 360987
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || |||||||| || ||
Sbjct 360986 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 360927
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 360926 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 360891
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 362466 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 362407
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 362406 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 362347
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| || | | || | ||||| ||| || ||| |||| || ||
Sbjct 362346 TCTTGGATTTTGCCTTG-ACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTGATG 362289
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||||| |||||||||||||| ||||||
Sbjct 362288 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 362253
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/216 (71%), Gaps = 5/216 (2%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 360423 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC-CA 360365
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || |||||
Sbjct 360364 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360305
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| | ||| ||| || | | || | ||||| ||| || ||| |||| || ||
Sbjct 360304 TCTG-GAT-TTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTGATG 360248
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| |||||| |||| |||||||||||||| ||||||
Sbjct 360247 GTTTTGCC-GTCAAGGTTTTCACAAAGATCTGCATA 360213
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/219 (71%), Gaps = 7/219 (3%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || ||||| || || ||||||||| || | ||||| |
Sbjct 361784 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361725
Query 27093 TCTTCGAGCTGTTTACCGGC--GTAA-ATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149
||||| ||||| || ||||| | || || || | ||| || || || || | || |||
Sbjct 361724 TCTTCCAGCTGCTTTCCGGCAAGCAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCT 361665
Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209
|| || | ||| ||| || | | || | ||||| ||| || ||| |||| ||
Sbjct 361664 TTGTCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTG 361607
Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | |||||| |||| || |||||||||||| ||||||
Sbjct 361606 ATGGTTTTGCC-GTCA-AGGTTTCACAAAGATCTGCATA 361570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424822100992608
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