Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10790 111 1e-19 >seq10790 Length=1503029 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 362012 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361953 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 361952 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361893 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || |||||||| || || Sbjct 361892 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 361833 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 361832 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 361797 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 362240 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 362181 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 362180 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 362121 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || |||||||| || || Sbjct 362120 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 362061 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 362060 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 362025 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || |||| ||||| || | || || ||||| || || ||||||||| || | ||||| Sbjct 362697 AAACGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC 362638 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| ||||| || ||||| | || || | ||| || || || || | || ||| Sbjct 362637 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCT 362578 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || ||| ||| || | | || | ||||| ||| || |||||||| || Sbjct 362577 TTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTG 362518 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||||||||||| |||||||||||||| |||||| Sbjct 362517 ATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 362479 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 359975 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 359916 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 359915 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 359856 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || |||||||| || || Sbjct 359855 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 359796 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||||||||| |||||||||||||| ||||| Sbjct 359795 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 359761 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 360650 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360591 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 360590 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360531 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | ||| ||| || | | || | ||||| ||| || || ||||| || || Sbjct 360530 TCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 360472 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 360471 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 360436 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 361331 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361272 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 361271 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361212 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || |||||||| || || Sbjct 361211 TCTTGGAT-TTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 361153 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 361152 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 361117 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 360878 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360819 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 360818 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360759 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || || ||||| || || Sbjct 360758 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 360699 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 360698 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 360663 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 360200 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360141 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 360140 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360081 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || |||||||| || || Sbjct 360080 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAG-GTGATG 360022 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| || |||||||||||| |||||| Sbjct 360021 GTTTTGCCCGTCA-AGGTTTCACAAAGATCTGCATA 359987 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 361557 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361498 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 361497 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361438 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | ||| ||| || | | || | ||||| ||| || ||| |||| || || Sbjct 361437 TCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTGATG 361380 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 361379 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 361344 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| ||| | ||||||||| || | ||||| | Sbjct 361104 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGA-TGTTGTAGTCGGACAGGGTGCGCCCA 361046 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | || || || || || | || ||||| Sbjct 361045 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCT-TGCTGGTCTGGAGGAATGCCTTCTTTG 360987 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || |||||||| || || Sbjct 360986 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 360927 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 360926 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 360891 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 362466 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 362407 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 362406 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 362347 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || ||| |||| || || Sbjct 362346 TCTTGGATTTTGCCTTG-ACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTGATG 362289 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| |||||||||||||| |||||| Sbjct 362288 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 362253 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 360423 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC-CA 360365 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || || | ||| || || || || | || ||||| Sbjct 360364 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360305 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | ||| ||| || | | || | ||||| ||| || ||| |||| || || Sbjct 360304 TCTG-GAT-TTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTGATG 360248 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| |||| |||||||||||||| |||||| Sbjct 360247 GTTTTGCC-GTCAAGGTTTTCACAAAGATCTGCATA 360213 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/219 (71%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 361784 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361725 Query 27093 TCTTCGAGCTGTTTACCGGC--GTAA-ATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 ||||| ||||| || ||||| | || || || | ||| || || || || | || ||| Sbjct 361724 TCTTCCAGCTGCTTTCCGGCAAGCAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCT 361665 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || | ||| ||| || | | || | ||||| ||| || ||| |||| || Sbjct 361664 TTGTCTG-GATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT-CTAGGGTG 361607 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | |||||| |||| || |||||||||||| |||||| Sbjct 361606 ATGGTTTTGCC-GTCA-AGGTTTCACAAAGATCTGCATA 361570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424822100992608