Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12452 87.8 2e-12 seq16337 84.2 2e-11 seq19613 82.4 8e-11 >seq12452 Length=479537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| |||||||| ||||||||||| || || || |||||| || ||||| Sbjct 149004 GCCTTTGC-TGCAGTGGAAGGGATCTTCTTCTCAGGTTCTTTTGCTGCTATATTTTGGCT 148946 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | || || ||||| || |||| |||||||| ||||| ||| ||| || || Sbjct 148945 GAAGAAGAGGGGTCTGATGCCTGGACTGACATTCTCCAATGAGCTCATTAGCCGAGATGA 148886 Query 60110 GG 60111 || Sbjct 148885 GG 148884 >seq16337 Length=344012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||||| || |||||||||| || | ||||| ||||||||| ||| Sbjct 239925 ATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTTTTCCTA 239984 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| | ||||||||| |||||| || ||||||||||| Sbjct 239985 TTACAAGAGTCCTTGTACAGCATGTAAGGGGTCCCGGTCTC 240025 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| || |||||||||||||||||||||||| ||||| || || || ||| Sbjct 244277 AGCTGTTTCCTGCTGTGTATGAAGGATGACAGCATTGAGGGAATCTATGACACTCTAAAG 244218 Query 19313 GAGTGCGCGCACATCTCCAA 19332 | || |||| |||||||| Sbjct 244217 CATTGTGCGCTGATCTCCAA 244198 >seq19613 Length=172026 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/180 (71%), Gaps = 11/180 (6%) Strand=Plus/Minus Query 159458 CCGAACTGATCGAAATTTGAACGCTTCTGGGGGTCGCTCAGGACCTCATAGGCCTCCTGG 159517 ||||||| ||||| | ||||||| ||||||||| || || || |||||||| | Sbjct 11469 CCGAACTTGTCGAAGATCTCCCGCTTCTTGGGGTCGCTGAGCACGTCGTAGGCCTCGGCG 11410 Query 159518 ACTTTCTTGAA---CTTCTCGGCGTCACCGCCCTTGT------CGGGGTGGT-GCTCGCG 159567 || | |||||| || ||||||| | | |||||| ||||||||| || | | Sbjct 11409 ACCTCCTTGAAGCGCTCCTCGGCGCCGGGGTCCTTGTTCTTGTCGGGGTGGTAGCGC-AG 11351 Query 159568 GGCAAGTTTGCGGTACGCCTTTTTGATGTCGGTCTCCGAGGCGCTCCGGTCGAGGCCTAG 159627 || | |||||||| ||||| ||||||||| |||| ||||| ||| | ||||| || Sbjct 11350 CGCCTGCTTGCGGTAGGCCTTCTTGATGTCGTCGTCCGCGGCGCCGCGGGCCAGGCCCAG 11291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548376122352960