Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11657 100 3e-16 seq10600 100 3e-16 seq14676 86.0 7e-12 >seq11657 Length=1258842 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 822907 GTGAAAATATAACGAGGGCTGGCAGCATCCTTCCCACCATGAAGCCTGGTACCAAACTGA 822848 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || || || | ||||| || |||||||| ||||||||||||||| Sbjct 822847 CCAATAGGCTGCAGTAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 822788 Query 117425 ATCGT 117429 || || Sbjct 822787 ATAGT 822783 >seq10600 Length=471005 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| || || ||||| Sbjct 397484 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTTCCACCATGCAGCCTGGTACCGAACTGA 397425 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || ||||||||||| ||| |||||||| |||||||||||||| | | Sbjct 397424 CCAATGGGCTGTAGCAGGTTGAGGTTATTGCTTCCCACGAAGTTCTGAGCCAAATTAATA 397365 Query 152149 ATCGT 152153 || || Sbjct 397364 ATGGT 397360 >seq14676 Length=200364 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | || |||||||| | || | ||||||| Sbjct 115171 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 115112 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||||||||||| ||||| ||| |||||| || ||||| || ||||| || Sbjct 115111 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCT 115052 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 115051 ACTACACGTT 115042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547067677103200