Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq10790 107 1e-18 seq11386 89.7 3e-13 >seq10790 Length=1503029 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| || | ||||| ||||| || |||||| || || || ||||| || || || Sbjct 362706 CCGCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362647 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 362646 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362587 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || || | ||| ||||| | ||| || Sbjct 362586 ATGCCTTCTTTGTCTTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 362528 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 362527 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362480 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 362024 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361965 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 361964 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361905 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || || | ||| ||||| | ||| || Sbjct 361904 ATGCCTTCTTTGTCTTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 361846 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 361845 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361798 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 362252 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362193 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 362192 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362133 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || || | ||| ||||| | ||| || Sbjct 362132 ATGCCTTCTTTGTCTTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 362074 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 362073 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362026 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| || |||| ||||| || |||||| || || || ||||| || || || || Sbjct 359984 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 359925 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || ||| | ||||| || || || |||||||| || | | ||| ||||| || || | Sbjct 359924 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 359865 Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTC 34661 || || ||||| ||| ||| | || || | ||| ||||| | ||| ||||| Sbjct 359864 CCTTCTTTGTCCTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTC 359806 Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||| || ||||| || || || ||||||||||| |||||||| || Sbjct 359805 TAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 359758 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 360662 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360603 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 360602 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360543 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || ||||||| ||| ||| | || || | ||| ||||| | ||| || Sbjct 360542 ATGCCTTCTTTGTCTG-GAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 360485 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 360484 CTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360437 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 360890 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360831 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 360830 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360771 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || || | ||| ||||| | ||| || Sbjct 360770 ATGCCTTCTTTGTCTTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 360712 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 360711 CTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360664 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 361343 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361284 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 361283 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361224 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| || | || || | ||| ||||| | ||| || Sbjct 361223 ATGCCTTCTTTGTCTTGGAT--TTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 361166 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 361165 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361118 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 361569 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361510 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 361509 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361450 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || ||||||| ||| ||| | || || | ||| ||||| | ||| || Sbjct 361449 ATGCCTTCTTTGTCTG-GAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 361392 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | | | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 361391 T-CTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361345 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 362478 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362419 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 362418 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362359 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| |||| || || | ||| ||||| | ||| || Sbjct 362358 ATGCCTTCTTTGTCTTGGAT--TTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 362301 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | | | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 362300 T-CTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362254 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || ||| |||| || || || Sbjct 361116 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGA-TGTTGTAGTCGGAC 361058 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | || ||||| || || Sbjct 361057 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCT-TGCTGGTCTGGAGGA 360999 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || || | ||| ||||| | ||| || Sbjct 360998 ATGCCTTCTTTGTCTTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 360940 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 360939 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360892 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/228 (70%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| || |||||| || || || ||||| || || || Sbjct 360435 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360376 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 360375 AGGGTGCGC-CATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360317 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || ||||||| ||| || | || || | ||| ||||| | ||| || Sbjct 360316 ATGCCTTCTTTGTCTG-GAT--TTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 360260 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | | | ||| || ||||| ||| | || ||||||||||| |||||||| Sbjct 360259 T-CTAGGGTGATGGTTTTGCCG-TCAAGGTTTTCACAAAGATCTGCAT 360214 >seq11386 Length=1204925 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| ||| | ||||| ||| |||||| || ||||| || || || Sbjct 432346 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAT 432287 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 432286 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 432227 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||||| | || || | ||| ||||| | ||| || Sbjct 432226 ATGCCTTCTTTGTCCTGAATCTTA-GCCTTGACATTCTCAATAGTGTCACTGGGCTCAAC 432168 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || | ||| || || || || || | || |||||||| ||||||||||||| Sbjct 432167 CTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGA 432115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314646425228372