Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq10790 96.9 2e-15 >seq10790 Length=1503029 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| || || | || || || || | Sbjct 362480 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362539 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 362540 GACACCATTGAGAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACC 362597 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || |||| || | |||| | ||||||| |||| Sbjct 362598 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 362657 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| |||| |||| ||||| ||||||| | ||||| Sbjct 362658 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGTTTAAGGGGCGG 362706 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||||||||| | || || ||| || || | || || || | Sbjct 359758 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCC 359817 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | |||| || | ||| ||||| ||||| ||||||||||| |||| | Sbjct 359818 AGCGACACCATTGAGAAT--GTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAG 359875 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || ||||||||||| || |||| || | |||| | ||||||| | Sbjct 359876 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACT 359935 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||||||||| ||||| |||| |||| ||||| |||| Sbjct 359936 ACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 359975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| || || | || || || || | Sbjct 360437 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360496 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| | ||||||||||| |||| || | Sbjct 360497 GACACCATTGAGAAT--GTCAAGGCCAAAATC-CAGACAAAGAAGGCATTCCTCCAGACC 360553 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || |||| || | |||| | ||||||| |||| Sbjct 360554 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 360613 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||| ||||| |||| |||| ||||| |||| Sbjct 360614 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 360650 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| || || | || || || || | Sbjct 360664 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360723 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 360724 GACACCATTGAGAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACC 360781 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || |||| || | |||| | ||||||| |||| Sbjct 360782 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 360841 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||| ||||| |||| |||| ||||| |||| Sbjct 360842 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 360878 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| || || | || || || || | Sbjct 361798 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361857 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 361858 GACACCATTGAGAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACC 361915 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || |||| || | |||| | ||||||| |||| Sbjct 361916 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 361975 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||| ||||| |||| |||| ||||| |||| Sbjct 361976 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 362012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| || || | || || || || | Sbjct 362026 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362085 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 362086 GACACCATTGAGAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACC 362143 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || |||| || | |||| | ||||||| |||| Sbjct 362144 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 362203 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||| ||||| |||| |||| ||||| |||| Sbjct 362204 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 362240 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || ||||||||||| || |||| Sbjct 360079 GACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAA 360138 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | ||||||| ||||||||||| ||||| |||| |||| ||||| || Sbjct 360139 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTG 360198 Query 28003 CG 28004 || Sbjct 360199 CG 360200 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || ||||||||||| || |||| Sbjct 361210 GACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAA 361269 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | ||||||| ||||||||||| ||||| |||| |||| ||||| || Sbjct 361270 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTG 361329 Query 28003 CG 28004 || Sbjct 361330 CG 361331 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| || || | || || || || | Sbjct 361345 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGA-GTAGAGCCCAGC 361403 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| | ||||||||||| |||| || | Sbjct 361404 GACACCATTGAGAAT--GTCAAGGCCAAAATC-CAGACAAAGAAGGCATTCCTCCAGACC 361460 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || |||| || | |||| | ||||||| |||| Sbjct 361461 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 361520 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||| ||||| |||| |||| ||||| |||| Sbjct 361521 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 361557 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || ||||||||||| || |||| Sbjct 362345 GACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAA 362404 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | ||||||| ||||||||||| ||||| |||| |||| ||||| || Sbjct 362405 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTG 362464 Query 28003 CG 28004 || Sbjct 362465 CG 362466 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || ||||||||||| || |||| Sbjct 360303 GACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAA 360362 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | ||||||| ||||||||||| ||||| |||| |||| ||||| || Sbjct 360363 GATGG-CGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTG 360421 Query 28003 CG 28004 || Sbjct 360422 CG 360423 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| || || | || || || || | Sbjct 360892 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 360951 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 360952 GACACCATTGAGAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACC 361009 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||||||||| || |||| || | |||| | ||||||| |||| Sbjct 361010 AGCAA-GGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 361068 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||| || ||||| |||| |||| ||||| |||| Sbjct 361069 ACAT-CAGAAAGAATCCACTCTGCACTTGGTCCTGCG 361104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355768354909068