Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq10790 95.1 1e-14 >seq10790 Length=1503029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 359969 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 359910 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| Sbjct 359909 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGG 359850 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | ||| | ||| || |||||| Sbjct 359849 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTG 359790 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCATT 101239 |||||||| ||||| | ||| || |||||| Sbjct 359789 CCCGTCAAGGTTTTCACAAAGATCTGCATT 359760 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 362006 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 361947 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| Sbjct 361946 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 361887 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | ||| | ||| || |||||| Sbjct 361886 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTG 361827 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| ||||| | ||| || ||||| Sbjct 361826 CCCGTCAAGGTTTTCACAAAGATCTGCAT 361798 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 362234 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 362175 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| Sbjct 362174 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 362115 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | ||| | ||| || |||||| Sbjct 362114 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTG 362055 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| ||||| | ||| || ||||| Sbjct 362054 CCCGTCAAGGTTTTCACAAAGATCTGCAT 362026 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 362688 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 362629 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| Sbjct 362628 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 362569 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | ||| | ||| || |||||| Sbjct 362568 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTG 362509 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| ||||| | ||| || ||||| Sbjct 362508 CCCGTCAAGGTTTTCACAAAGATCTGCAT 362480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 360644 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 360585 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| | Sbjct 360584 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTG-G 360526 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | || | ||| || |||||| Sbjct 360525 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTG 360466 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| ||||| | ||| || ||||| Sbjct 360465 CCCGTCAAGGTTTTCACAAAGATCTGCAT 360437 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 360872 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 360813 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| Sbjct 360812 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 360753 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | || | ||| || |||||| Sbjct 360752 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTG 360693 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| ||||| | ||| || ||||| Sbjct 360692 CCCGTCAAGGTTTTCACAAAGATCTGCAT 360664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| ||| | ||||| |||| || || ||||||| Sbjct 361098 ACCAAGTGCAGAGTGGATTCTTTCTGA-TGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 361040 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || |||||| | |||||| || | |||||||||||| Sbjct 361039 AGCTGCTTTCCGGCAAAGATCAGCCTT-GCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 360981 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | ||| | ||| || |||||| Sbjct 360980 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTG 360921 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| ||||| | ||| || ||||| Sbjct 360920 CCCGTCAAGGTTTTCACAAAGATCTGCAT 360892 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 361551 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 361492 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| | Sbjct 361491 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTG-G 361433 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | || | ||| || |||||| Sbjct 361432 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC-TCTACTCTAGGGTGATGGTTTTG 361374 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| ||||| | ||| || ||||| Sbjct 361373 CCCGTCAAGGTTTTCACAAAGATCTGCAT 361345 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| |||||||| || || ||||| |||| || || ||||||| Sbjct 360194 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 360135 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | || || || ||| | || ||||| || |||||| || | |||||||||||| Sbjct 360134 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 360075 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || || ||| | | ||| | ||| || |||||| Sbjct 360074 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTA-GGTGATGGTTTTG 360016 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||| | ||| | ||| || ||||| Sbjct 360015 CCCGTCAA-GGTTTCACAAAGATCTGCAT 359988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409552537404156