Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq14676 96.9 3e-15 seq12452 95.1 1e-14 >seq14676 Length=200364 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||| ||| ||||| ||||| || || || |||||||| |||||||| ||||| || Sbjct 111816 TGGATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCAT 111757 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||||||| || || || || || | ||||| ||||| || ||||| Sbjct 111756 AGCAATCTGGAAGCCATAGAAACAGCGTGCTTCCGTTACCTGTACTTC 111709 >seq12452 Length=479537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||| |||||| || || || || || || | ||| ||||| | ||| ||||| || Sbjct 148886 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 148945 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 148946 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGGCA 149005 Query 4692 AC 4693 || Sbjct 149006 AC 149007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || || |||||||||||||| |||| |||||||| || Sbjct 158172 TACCAAATTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAAGCCAGGACATGAGAGAT 158231 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||| | ||| || | || || || |||||||| || || || || | ||||||||| Sbjct 158232 GAAGTATTTTTCTTCTGATTTCAGCTTGTTCCAGTGAGGAAAGTCCTTTGATAAATCAAC 158291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426936742000772