Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq14676 109 8e-19 seq12452 100 4e-16 seq16337 93.3 6e-14 >seq14676 Length=200364 Score = 109 bits (120), Expect = 8e-19 Identities = 117/153 (76%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCC 47845 |||| |||||||||| |||| |||| ||| |||||| || ||||| ||||| Sbjct 117210 GTTCATTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATTACTCC 117151 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| || || ||||| || || || ||||| || || ||||| |||||||||| || || Sbjct 117150 CATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGAT 117091 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATT 47938 ||| |||||||| ||||||||||| |||| || Sbjct 117090 ATTCTCCATAAAGTCAAATGGATTCTCTGCTTT 117058 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| |||||||||||| | ||||| |||||||| || || || ||||| || || Sbjct 111813 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 111754 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||| || | |||||| || Sbjct 111753 AATCTGGAAGCCATAGAAACAGCGTGCTTCCGTTACCTGTACTTC 111709 >seq12452 Length=479537 Score = 100 bits (110), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| |||||||| || || || | ||| ||||||||||| ||||||||||| | Sbjct 161137 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 161196 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTC 48751 ||||||| |||||| || ||||||||| ||||||||| || | |||||| Sbjct 161197 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTTCTGAGAAGAGGTTC 161249 >seq16337 Length=344012 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| || || || | || || || ||||| || |||||||| || ||||| | || Sbjct 235429 TGAAACTCGCCCGAGAGGACCCTGCGTGTGTAGATGTTACTGGTGTAGGGTTCAATGGAC 235488 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 |||||||| ||||| || ||||||||||||||||||||||| || Sbjct 235489 TCATTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGG 235532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694480510021760