Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq14676 102 1e-16 seq12452 98.7 1e-15 >seq14676 Length=200364 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || |||||||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 111813 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 111754 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 111753 AATCTGGAAGCCATAGAAACAGCGTGCTTCCGTTACCTGTACTTCT 111708 >seq12452 Length=479537 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||| ||||| | || || || ||||| || |||||||| || || | ||| || Sbjct 148886 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 148945 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || ||||| || || ||||| || ||||| || || || || || Sbjct 148946 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGGCA 149005 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 149006 ACCACTCTCTCCCC 149019 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || ||||| ||||||||||| || || | ||| ||||||||||| ||||||||||| | Sbjct 161137 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 161196 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240 ||||||| || || || ||||||||| ||||||||| || | |||||| Sbjct 161197 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTTCTGAGAAGAGGTTC 161249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712741159130880