Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq10790 102 7e-17 >seq10790 Length=1503029 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 |||||||| || ||||| ||||| ||||| ||||||||||| ||| | ||| || ||| Sbjct 359758 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCC 359817 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||||| | ||| | || || ||||| |||||||||||| |||| || Sbjct 359818 AGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGAC 359877 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || || ||||| || | ||| || || || |||||||| || || |||| || Sbjct 359878 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 359937 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTG 111325 || || || |||||||| || || || || || |||| || || |||| Sbjct 359938 AACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTG 359986 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | ||| || |||||| Sbjct 361798 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361857 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| |||||||||||| |||| || || Sbjct 361858 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361917 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 361918 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361977 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 361978 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 362024 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | ||| || |||||| Sbjct 362026 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362085 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| |||||||||||| |||| || || Sbjct 362086 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362145 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 362146 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362205 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 362206 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 362252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | || || |||||| Sbjct 360437 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360496 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| | |||||||||||| |||| || || Sbjct 360497 GACACCATTGAGAATGTCAAGGCCAAAATC-CAGACAAAGAAGGCATTCCTCCAGACCAG 360555 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 360556 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360615 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 360616 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 360662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | || || |||||| Sbjct 360664 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360723 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| |||||||||||| |||| || || Sbjct 360724 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360783 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 360784 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360843 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 360844 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 360890 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | ||| || |||||| Sbjct 362480 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362539 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| |||||||||||| |||| || || Sbjct 362540 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362599 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 362600 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362659 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111315 || || |||||||| || || || || || ||||| Sbjct 362660 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGT 362695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | ||| || |||||| Sbjct 360892 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 360951 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| |||||||||||| |||| || || Sbjct 360952 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361011 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 | |||||| || | ||| || || || |||||||| || || |||| || || Sbjct 361012 C-AAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361070 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 361071 AT-CAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 361116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | ||| || |||||| Sbjct 361118 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361177 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||| | |||||||||||| |||| || || Sbjct 361178 GACACCATTGAGAATGTCAAGGCCAAA-TCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361236 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 361237 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361296 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 361297 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 361343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | || | | |||||| Sbjct 361345 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGTAG-AGCCCAGC 361403 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| | |||||||||||| |||| || || Sbjct 361404 GACACCATTGAGAATGTCAAGGCCAAAATC-CAGACAAAGAAGGCATTCCTCCAGACCAG 361462 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 361463 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361522 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 361523 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 361569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||| | ||||| ||||||||||| ||| | ||| || |||||| Sbjct 359988 ATGCAGATCTTTGTGAAACC-TTGACGGGCAAAACCATCACC-TAGAAGTAGAGCCCAGC 360045 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| |||||||||||| |||| || || Sbjct 360046 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360105 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 360106 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360165 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 360166 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 360212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| ||||||||||| ||| | || | | |||||| Sbjct 362254 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGTAG-AGCCCAGC 362312 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||| | |||||||||||| |||| || || Sbjct 362313 GACACCATTGAGAATGTCAAGGCAAAA-TCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362371 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||||||| || || |||| || || Sbjct 362372 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362431 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || |||| || || ||||| Sbjct 362432 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 362478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421699726372384