Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq8995 140 5e-28 seq20616 138 2e-27 >seq8995 Length=201141 Score = 140 bits (154), Expect = 5e-28 Identities = 173/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||| ||||| ||||| Sbjct 24530 TCACCGATGAGGATGAGGCGGGCTGTCTGGAAGAGCTGCTCGTCGCTCCACGTCGGATGC 24589 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||||| || || || || | |||||| || | |||||||| || || |||||| Sbjct 24590 TCCTGCTTCAGCACGTCACAGACTCGGTTGTGCTCGCGAAGCCAGATGGTCGCATACATC 24649 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGT--TTTCGG 9409 || ||||| || | ||||||||| |||| || || |||||||| || | | || || Sbjct 24650 ATTAGCCCCGGCAGCAGGCCAAACACCTCCTGGCCCACAGCCAGCTGCTTTTCCTTGGGG 24709 Query 9410 GCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATA 9464 | || ||| ||| ||||||||||| ||| | | || ||||| ||| ||||| Sbjct 24710 GTAC--CGGCAGGGTAGATCATGTGAACCGGAGCCTCGAGGACCGTGGGTGGATA 24762 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/285 (68%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||||||||| ||| || || ||| | | || | || |||||| | Sbjct 20920 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACGATCTCA 20979 Query 8363 AACCCCACGTCT--CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 || || ||| || || || ||||||||||||||||| |||||||||||||| || Sbjct 20980 AAGCCA--GTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATGGGGT 21037 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | | | || ||||| ||||| ||||| || || | ||| | |||||||| || || | Sbjct 21038 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 21097 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | | || || | || || | ||| || || | || | ||||| || | | || Sbjct 21098 TAGTGTCTTTCTGGCGTTTCTCAAGCAACAAACCAGGATAAAACTCCAAGGCATTAATGT 21157 Query 8541 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 |||| || || | || || || || |||||| |||||||| Sbjct 21158 CTCCATATAGCTCTTCCAGCTCCGCTGCTTTCTCCTCTTCTCCTG 21202 >seq20616 Length=1301372 Score = 138 bits (152), Expect = 2e-27 Identities = 213/303 (70%), Gaps = 1/303 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| ||||| ||||| | |||| || || | || || | |||| || | Sbjct 789438 GGACAGCCCTTCACGTTATTGCAGATGAGCTTTTGTAGAGAGGCAGTATTGATTATTTCA 789497 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | |||||| |||||||| || ||||||||| | || || ||||| | || Sbjct 789498 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 789557 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| | ||||| || || || | || | ||| ||||||| |||||| Sbjct 789558 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 789617 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || ||||| ||| |||| || | | || | ||||||||||| ||| || | |||| Sbjct 789618 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 789677 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAATAAAAAA 8601 || ||||| | | ||| || || || || ||||||||||| | |||| ||| ||| Sbjct 789678 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAATAATTATTAATAAA 789737 Query 8602 TAA 8604 ||| Sbjct 789738 TAA 789740 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || || ||||| || ||||| ||| ||||||||||||| | || || || Sbjct 792627 ATGAGCCTGGTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGG 792686 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| ||||| || |||||||| || ||||| |||||||| | || || Sbjct 792687 ATGTCACAGACCCGATTGTGCTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGG 792746 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| | || |||| | ||| || | || || | || || Sbjct 792747 ACCAAACCAAACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGG 792806 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | ||| || |||||||| || ||||||||| Sbjct 792807 TAGATCATTTCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 792866 Query 9484 TG 9485 || Sbjct 792867 TG 792868 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 9646 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 9705 || |||||||||||| || || |||| |||||||| || ||| ||| ||| | Sbjct 794051 TGATCTTACCCCATGGCCGAGAGCTTTGGTGAAGGCTGGCCCTTTGTGGTGATCTGTCTT 794110 Query 9706 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 9765 ||| |||||||| ||||||||||| |||| || | ||||| | || ||||| || || Sbjct 794111 AAAGAACTGGTGGGTGAAATGTTGAGCAAAGAACGTGAACATCATATTTGTGCCTTGAGG 794170 Query 9766 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 9825 ||| ||| | || | ||| || ||| ||| |||||||| ||| | ||| || || Sbjct 794171 ATCAGGAAT-AATTTTTTCCTCAGCAGAAATTTCTCCACAACTACTGCAGAATCTGGGAG 794229 Query 9826 CTTTGTTTTACCTG 9839 || | ||||||| Sbjct 794230 CTCCTTCTTACCTG 794243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716682490543360