Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2566 123 3e-23 seq22 111 2e-19 seq4627 84.2 3e-11 >seq2566 Length=113286 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | || || ||||| || || || |||||||| || || || | Sbjct 13191 CCTCATCTCTACTGATCAGCTCATTAGAAAAAGTAAGCCCAGGCATTAGACCTCGTTTCT 13132 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| |||||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 13131 TCAGCCAAAATATTGACGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 13072 Query 42207 C 42207 | Sbjct 13071 C 13071 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 41714 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCC 41770 || ||||| || || |||| |||| ||| || ||| | || ||||| || ||| Sbjct 14719 TTCCTTTAGAAATCTGCATCCAAAGTAAATGCGTTATCTGCAGGACGTGACATCACACCC 14660 Query 41771 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATA 41830 || |||| ||||| || ||||| ||||| || ||||||||||| ||||||| || ||| Sbjct 14659 ATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATA 14600 Query 41831 TTTTCCATGAAATCAAACGGATT 41853 || ||||| || ||||| ||||| Sbjct 14599 TTCTCCATAAAGTCAAATGGATT 14577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 42316 TTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 ||| ||| ||| |||| || ||||| || | | |||||||||||||||||||||||| Sbjct 11702 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 11643 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | || || || || |||| |||| Sbjct 11642 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACTTGTATTTCT 11588 >seq22 Length=1337131 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| ||||| | ||||||||| || || || || ||||||| || | ||| || Sbjct 639712 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 639771 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||| | ||||| | |||||||||||||| |||||||| || ||||| ||| Sbjct 639772 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCTACAGCAGCAAACGCA 639831 Query 42209 ATAAGTCTCTCTCC 42222 | | ||| || || Sbjct 639832 ACCACTCTTTCACC 639845 >seq4627 Length=64116 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| | || ||| ||| | || || || ||||| || | Sbjct 13016 TCCAGCCGTAGAAGTGCATACTGCTCAGCTTGCCGTAGTTGGGCTCCGCAATGTGGATGT 13075 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || || ||||||||||| |||| ||| || ||||| || | ||| |||| Sbjct 13076 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCCGCCATCTTCAGGATGGTCT 13135 Query 70988 TTTGTGGAATTTCCCA 71003 | || | || ||||| Sbjct 13136 TCTGGGAGATCTCCCA 13151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668652637653240