Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1135 181 2e-40 seq7643 163 7e-35 seq22 114 3e-20 seq25499 109 1e-18 >seq1135 Length=474297 Score = 181 bits (200), Expect = 2e-40 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| ||||||||||| || || || ||||| || ||||| || || || || ||||||| Sbjct 61638 GAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAATATCTGGACACAATATTCTTCA 61697 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 ||||| ||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 61698 TCCTAAGAAAGAAATTTAATCAAATCAGTTTTCTTCATGTCTATCACCATTTCACTATGT 61757 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||||||| | ||||| || || |||||| | ||||||||||||| Sbjct 61758 TTACTTTATGGTGGATTGGCATCAAATGGGTTGCAGGAGGACAAG 61802 >seq7643 Length=26413 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 24587 ATCCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 24528 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || ||||||||||| || ||||||||||| || ||| Sbjct 24527 GAAAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGA 24468 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | |||||| || || || Sbjct 24467 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTTGGCTCC 24408 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||||| || || ||||| ||||| | || || ||||| ||||||||||| Sbjct 24407 ACCTCTAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATTTT 24355 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 24815 ATGCCACCCCTCAGACGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 24756 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || |||||||| || ||||||||||| || | |||||| ||||||||| Sbjct 24755 GAAAGGGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCAGGA 24696 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || || || ||||| || || || | ||| || || || || Sbjct 24695 GGAATGCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCC 24636 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || || || |||||||| Sbjct 24635 ACCTCCAGGGTGATGGTCTTCCCAGTTAAGGTCTTCACGAAGATCTGCAT 24586 Score = 100 bits (110), Expect = 7e-16 Identities = 158/230 (69%), Gaps = 14/230 (6%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || ||||| ||||| || || |||||| Sbjct 25029 ATGCCTCCTCTCAGACGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 24970 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || ||||||||||| || ||| Sbjct 24969 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCTGGA 24910 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || | ||| || || || || Sbjct 24909 GG--------------ANTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCC 24864 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || || || |||||||| Sbjct 24863 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 24814 >seq22 Length=1337131 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | ||||| ||||| ||||||||||| || |||||||| || ||||||| Sbjct 639845 GGTGAAAGAGTGGTTGCGTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGTGCTTTTGCA 639786 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || |||||| | ||||| ||||| | |||||||| | |||||||| |||||| | Sbjct 639785 GCCATATTTTGGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAACGAACTT 639726 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 639725 ATTAGCAGAGATGAAG 639710 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || || || || ||||| | ||||| || || ||||||||| | ||||||||| Sbjct 642747 CAAGAAGTGCAAATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGATATCAATAGAAAAT 642688 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||||| |||||||||||| | |||||||| ||||| || Sbjct 642687 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACTTACAT 642647 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 268672 GGAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGA 268731 |||||| || ||| || || || || ||||||| || |||||||| ||| | ||| Sbjct 645007 GGAACCTCTCTTAAGGAAGAATCCCCATCGATTTGTCATCTTTCCAATCCAGTACCCTGA 644948 Query 268732 TATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGT 268785 |||||||| |||||||| ||||| |||||||| ||||| |||||||| || Sbjct 644947 TATATGGAAAATGTACAAGCAGGCTCAGGCTTCTTTCTGGACAGTAGAAGAGGT 644894 >seq25499 Length=1430 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | | ||||| || | || | |||||||| || | | | | ||| Sbjct 177 AGGACAAGATGGAGGATGGATTCCTTTGGGATGCTGTAGTCAGAGAGGATGCGATCATCT 236 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || |||| |||||| || ||||||||||| || || || || ||||| |||||| Sbjct 237 TCCAGCTGCTTTC-AGCAAAGATCAGCCTCTGTTGGTCTGGCGGAATGCCTTCCTTATCC 295 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || | |||||| ||| || | |||| | ||| || || || ||| Sbjct 296 TGAATCTTGGCATTGAGATTTTCAGTGGTGTCACCGGGTTTCAACTCCAGGGTGATGGTC 355 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || | || |||||||| Sbjct 356 TTCCCAGTTAAGGTATTGATGAAGATCTGCAT 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147025835403492