Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1978 129 8e-25 seq6935 127 3e-24 >seq1978 Length=181997 Score = 129 bits (142), Expect = 8e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| | |||||||||||| |||| | | ||| || Sbjct 47717 CCCCCGAAGGTGCTGGGCTTCCAGTATTCAGGGGAGCAGATGGGGTTCCCAAGGAGCCCC 47658 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || | ||| || |||||||||| ||||| ||||| | || |||||| || ||| | Sbjct 47657 TTCAAGGAGAAGGGAGCCCCCATCTCGATCATGCTTTGTCCAAAGATGCTGTCGGGGTAG 47598 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 | ||| |||||||| | || | | | ||||||| ||| ||||||||||| || || Sbjct 47597 GTCTTCTCCACCAACAGGCCAGGGAAGAACTCCAGAGCATCGATGTCTCCATACAG 47542 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9447 ATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTG 9506 ||| ||||| | | |||||| || || | | ||| ||||| | || || || || Sbjct 45792 ATCTGGCATTAAGGCATGCCAATGGTAAAGCTGGTTGAACTCCAGAGCGATGCGGTTCTG 45733 Query 9507 GTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCC 9566 |||||||||| | |||||||| || ||||||| ||||| || || | ||||||||| Sbjct 45732 GTACTGGAACTGGGACCCAAAGAGAAGGTCGGGCTCAAACATCAGCTTCAGGTGGTAGCC 45673 Query 9567 GCTGAGCTGCTGAACATACTGCGTCACGATAATGTTGATTGTTTCCCC 9614 |||||| ||||| ||||| | | | || ||| ||||| || || || Sbjct 45672 GCTGAGATGCTGGACATAATCCTCAATGACAATTTTGATCGTCTCACC 45625 >seq6935 Length=32064 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 |||||||| ||| |||| ||| ||||||||| ||||||| ||| |||| || || || Sbjct 10889 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10830 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | || ||||||| |||||| | || || |||||||| || || || |||| |||||| Sbjct 10829 CGATTATGTTCCCGGAGCCACAATGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 10770 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || |||| | || | || || | | ||| ||||||||||| | Sbjct 10769 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATATGGGGTGGATAGATCATTTCT 10710 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| ||||| || | || ||||||||||| || ||||| ||||| Sbjct 10709 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 10660 Score = 123 bits (136), Expect = 4e-23 Identities = 165/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| || || || || || || |||||||| | || ||||||||||| | Sbjct 13504 CAAAGCCCACTGTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACAT 13445 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| || ||||| | ||| || ||||| || || || | ||| ||||||| |||| Sbjct 13444 TTCCCAGAAGACCTTTCAAGGAGAAGGGAGCGCCAAGTTCAATCATGGTCTCACCAAAGA 13385 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929 |||| ||||| ||||||| || ||||| | | ||| || |||| ||| || ||| Sbjct 13384 TGGCTCCAGGACGTGGCTTTT-CAATAAGAAGAGCAGGGTATAATTCCATAGCATCAATG 13326 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| ||||| | ||||| ||||| ||||| ||||| ||||| Sbjct 13325 TCTCCATAAAGTTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 13279 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 |||||||||||||| || ||||| |||||| | || ||| ||| ||| | || Sbjct 9692 CTTACCCCATGTCCAAGACCTTTTGTGAAGCCTGGTCCTTTTTGAGTATCTGTCTTGAAG 9633 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 9632 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 9573 Query 10149 GGAGTGAAGGTCCTCCGAAG-AAGAGttttt 10178 ||| |||| | |||| || |||| ||||| Sbjct 9572 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 9542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705899724472560