Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2001 194 3e-45 seq141 181 2e-41 seq6438 178 2e-40 seq481 159 5e-35 seq1851 141 1e-29 seq9062 123 4e-24 >seq2001 Length=193380 Score = 194 bits (214), Expect = 3e-45 Identities = 206/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||| || || |||| | |||| ||||||||||||||||| || || || || |||| Sbjct 179241 CGCTAAACGCCACCGCAAAG-TCTTGCGAGATAACATCCAAGGCATTACTAAACCCGCTA 179299 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| ||||||||||||| ||||| |||||| ||||||| ||| ||||||| |||| Sbjct 179300 TCCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCTGGTTTGATCTATGAGGAGA 179359 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | || || | | ||| |||| ||||| | || |||| Sbjct 179360 CTCGCGGGGTGCTGAAGGTGTTTCTGGAAAACGTCATCCGCGATGCCGTGACTTACACCG 179419 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| || || |||||||| | || ||||| |||||||| |||| Sbjct 179420 AGCACGCCAAGAGGAAGACGGTGACTGCCATGGATGTTGTGTATGCCTTGAAACGCCAAG 179479 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | ||||| ||||| ||||| Sbjct 179480 GCCGTACCCTGTATGGATTTGGTGGTTAA 179508 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||| || || |||| | |||| |||||||||||||| || || || ||||| |||| Sbjct 163843 CGCTAAACGCCACCGCAAAG-TCTTGCGAGATAACATCCAGGGCATTACTAAGCCCGCTA 163785 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||||||||| ||||| || ||| ||||||| || | || || |||| Sbjct 163784 TCCGCCGACTGGCTCGTCGTGGGGGAGTGAAACGTATCTCTGGCTTAATTTACGAGGAGA 163725 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | || || | | ||| |||| ||||| | || |||| Sbjct 163724 CTCGCGGGGTGCTGAAGGTGTTTCTGGAAAACGTCATCCGCGATGCCGTAACGTACACCG 163665 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| | || ||||| |||||||| |||| Sbjct 163664 AGCACGCCAAGAGGAAGACTGTGACTGCCATGGATGTTGTGTATGCCTTGAAACGCCAAG 163605 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || ||||| ||||| Sbjct 163604 GCCGTACTCTGTACGGATTTGGTGGTTAA 163576 >seq141 Length=805825 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||| | ||||| | | || || || ||||||||||| || |||||||| ||||| Sbjct 7193 CGCTAAGAGGCATCGGAAAGTGCTCCGCGACAACATCCAAGGCATTACCAAGCCTGCTAT 7134 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||| ||||| ||||| |||||| | ||||| ||| | || ||||| | Sbjct 7133 TCGTCGTTTGGCTCGCCGTGGGGGAGTAAAGCGTATTTCTGGCTTGATTTACGAAGAAAC 7074 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| | | |||||| | ||||||| | ||| ||||| Sbjct 7073 TCGGGGCGTACTGAAGGTTTTCCTGGAAAACGTTATTCGTGATGCTGTGACCTACACCGA 7014 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || |||||||| || | ||||| |||| ||||| |||||||| ||||| Sbjct 7013 GCATGCAAAGCGGAAGACTGTGACTGCGATGGACGTCGTTTATGCCTTGAAACGCCAAGG 6954 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| || ||| | ||| Sbjct 6953 TCGCACTCTGTATGGCTTCGGAGGCTAA 6926 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct 10797 CTCCGCGACAACATCCAAGGCATCACCAAGCCTGCTATTCGCCGTCTGGCTCGCCGTGGA 10738 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || || ||| | || ||||||| ||||| ||| |||| |||| Sbjct 10737 GGTGTGAAGCGTATTTCGGGCTTGATTTACGAAGAGACTCGTGGTGTACTGAAAGTCTTT 10678 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||||| | |||||| | ||| ||||||||||| || | ||||| || Sbjct 10677 TTGGAGAATGTTATTCGGGATGCTGTGACCTACACCGAGCACGCGAAGAGAAAGACCGTA 10618 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| |||||||| ||||| |||| | || |||||||| Sbjct 10617 ACTGCGATGGATGTTGTTTATGCTTTGAAACGCCAAGGTCGTACTCTGTACGGTTTTGG 10559 Score = 150 bits (166), Expect = 3e-32 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || || || ||||| ||||| || || ||||||||||||| Sbjct 18222 CTTCGCGACAACATCCAGGGCATTACGAAGCCTGCTATTCGCCGCTTGGCTCGTCGTGGG 18163 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || | |||||||||||| ||| | || || ||| |||| Sbjct 18162 GGAGTGAAGCGGATCTCCGGGCTCATCTATGAAGAGACTCGAGGCGTCTTAAAGGTCTTT 18103 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| |||||||| ||||| | ||| || ||||| || || | ||||| || Sbjct 18102 TTGGAGAACGTTATCCGGGATGCGGTTACCTACACTGAGCATGCCAAGAGGAAGACGGTG 18043 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||| ||||| |||||||| ||||| || | | || |||||||| Sbjct 18042 ACTGCTATGGACGTCGTTTATGCTTTGAAACGCCAAGGTCGCACCTTGTACGGTTTTGGT 17983 Query 16694 AGTTAA 16699 ||||| Sbjct 17982 GGTTAA 17977 >seq6438 Length=36418 Score = 178 bits (196), Expect = 2e-40 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||| | | |||||| ||||||||||| || ||||||||||| || || Sbjct 12273 CGCCAAGAGGCATCGGAAAGTTCTTCGTGATAACATCCAGGGCATCACCAAGCCGGCAAT 12214 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||| || |||||| | || || || |||| || |||| Sbjct 12213 CCGCCGTCTGGCTCGCCGCGGTGGCGTGAAGCGTATTTCGGGTCTGATCTACGAGGAGAC 12154 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| ||||||| ||| ||| || | |||||| || ||| ||||| Sbjct 12153 TCGCGGCGTCCTGAAGGTCTTCCTGGAGAACGTGATTCGGGATGCTGTCACCTACACCGA 12094 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| | ||||| |||| || || ||||| || || || Sbjct 12093 GCACGCCAAGAGGAAGACTGTCACCGCTATGGACGTCGTTTACGCCTTGAAGCGGCAGGG 12034 Query 16672 CCG 16674 || Sbjct 12033 ACG 12031 >seq481 Length=401036 Score = 159 bits (176), Expect = 5e-35 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || || |||||||| ||||| || ||||||||||| || ||| Sbjct 78160 CTTCGCGATAACATCCAGGGCATTACCAAGCCGGCTATTCGCCGTCTGGCTCGCCGCGGT 78101 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || || || | || || |||| ||| | || ||||| ||||| Sbjct 78100 GGCGTGAAGCGTATTTCGGGTCTGATTTACGAGGAGACTCGCGGCGTCCTGAAGGTCTTC 78041 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || ||||||||||||||| || | ||||| || Sbjct 78040 CTGGAGAACGTGATTCGGGATGCCGTCACCTATACCGAGCACGCCAAGAGGAAGACGGTT 77981 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || ||||| || || || || Sbjct 77980 ACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAGGGACG 77940 >seq1851 Length=148322 Score = 141 bits (156), Expect = 1e-29 Identities = 184/253 (73%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| ||||| |||||||| ||| ||||||| || || Sbjct 147795 CTCCGCGATAACATCCAAGGCATCACGAAGCCGGCTATCCGCCGTTTGGCTCGCCGCGGA 147854 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||| ||| |||| ||||||| |||| || |||||| | ||| Sbjct 147855 GGCGTGAAGCGAATTTCTGGCTTGATCTACGAAGAGACGCGTGGCGTGTTGAAGGTTTTC 147914 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | ||| |||| |||||| | || || ||||| ||||| | ||||| || Sbjct 147915 TTGGAAAACGTGATCCGCGATGCTGTGACTTACACTGAGCATGCTAAGAGGAAGACCGTG 147974 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || |||| || ||||| || | | || || ||||| Sbjct 147975 ACGGCCATGGACGTGGTGTACGCGCTGAAGCGCCAAGGTCGCACTTTGTACGGCTTTGGG 148034 Query 16694 AGTTAATCTTCTA 16706 | |||| ||||| Sbjct 148035 GGCTAAT-TTCTA 148046 >seq9062 Length=25048 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || || || || |||||||| || || Sbjct 12329 CTCCGGGATAACATCCAGGGTATCACGAAGCCCGCCATTCGCCGGCTGGCTCGGCGCGGG 12388 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||| || | || || | |||| ||||| | ||| | ||| |||| |||| Sbjct 12389 GGCGTCAAACGGATTTCGGGGCTCATCTACGAAGAAACTCGGGGCGTTCTGAAAGTCTTT 12448 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || || | ||| ||||||||||| || | ||||||||| Sbjct 12449 TTGGAGAACGTGATTCGCGACGCGGTAACCTACACCGAGCACGCCAAGAGGAAGACTGTC 12508 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || |||||||| | ||||| || |||| || |||||||| Sbjct 12509 ACGGCCATGGATGTGGTCTACGCCCTGAAGCGCCAAGGCCG 12549 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || || || || |||||||| || || Sbjct 24406 CTCCGGGATAACATCCAGGGTATCACGAAGCCCGCCATTCGCCGGCTGGCTCGGCGCGGG 24465 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||| || | || || | |||| ||||| | ||| | ||| |||| |||| Sbjct 24466 GGCGTCAAACGGATTTCGGGGCTCATCTACGAAGAAACTCGGGGCGTTCTGAAAGTCTTT 24525 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || || | ||| ||||||||||| || | ||||||||| Sbjct 24526 TTGGAGAACGTGATTCGCGACGCGGTAACCTACACCGAGCACGCCAAGAGGAAGACTGTC 24585 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || |||||||| | ||||| || |||| || |||||||| Sbjct 24586 ACGGCCATGGATGTGGTCTACGCCCTGAAGCGCCAAGGCCG 24626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78804200319507