Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2566 111 2e-19 seq3982 84.2 2e-11 >seq2566 Length=113286 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| ||||| || | ||||||||||| || | || ||||||| |||| || || Sbjct 13189 TCATCTCTACTGATCAGCTCATTAGAAAAAGTAAGCCCAGGCATTAGACCTCGTTTCTTC 13130 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | |||||||||||||||||| | || |||||||| || || ||||| ||||||||||| Sbjct 13129 AGCCAAAATATTGACGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 13070 Query 21620 ACTAATCGTTCACC 21633 |||| ||||| || Sbjct 13069 ACTACACGTTCGCC 13056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | || | |||||| | |||||| | ||||| Sbjct 14715 TTTAGAAATCTGCATCCAAAGTAAATGCGTTATCTGCAGGACGTGACATCACACCCATCC 14656 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | || | ||||| || ||||| ||||| ||||||| || ||| | Sbjct 14655 TTTGATATTCTCCTACACGCTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCT 14596 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||||| ||||||||||| |||| || ||||| Sbjct 14595 CCATAAAGTCAAATGGATTCTCAGCCTTGAATAT 14562 >seq3982 Length=125550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 153571 AAAACAATCACGGATATCTATATATTCAATTTAGCAATTTCTGATTTAATATTTGTTATA 153630 |||| || || ||||||||| || ||||| | || || |||||||| | |||||| | Sbjct 87407 AAAAGCATGACAGATATCTATGTACTCAATCTTGCCATCTCTGATTTGCTTTTTGTTCTT 87348 Query 153631 GATTTCCCATTCATAATCTATAATGA-GTTTGATCAATGGATATTTGGTGATTTTATGTG 153689 | | | || || | ||| | | | |||| ||| ||||||| ||| | |||| Sbjct 87347 GGTCTTCCTTTT-TGGTCTTACTTCATGGCTGATAGTTGGGTATTTGGAGATACTTTGTG 87289 Query 153690 TAAAGTAATTTC-TGTATCTTATTATATAGGATTTTTTAGTAATATGTTTTTGATTACAT 153748 |||||||| || || ||||| | || |||||||| ||| || ||||| |||| Sbjct 87288 TAAAGTAAGCTCTTGGATCTT-CCAGATTGGATTTTTCAGTGGAATCTTTTTTATTATGC 87230 Query 153749 TAATGAGTATAGATAGATATTTTGCAATT 153777 | |||||||| ||||| ||| |||| ||| Sbjct 87229 TTATGAGTATTGATAGGTATCTTGCCATT 87201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529930114184760