Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2566 114 1e-20 seq22 84.2 2e-11 >seq2566 Length=113286 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||||||||| || | |||||||| || |||| ||| | Sbjct 13191 CCTCATCTCTACTGATCAGCTCATTAGAAAAAGTAAGCCCAGGCATTAGACCTCGTTTCT 13132 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 13131 TCAGCCAAAATATTGACGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 13072 Query 19103 CAACTA 19108 | |||| Sbjct 13071 CTACTA 13066 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| || | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 11693 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 11634 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||||| |||| ||| Sbjct 11633 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACTTGTATTTC 11589 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTT 18671 ||| ||||| ||||||||| ||| | || ||| || | ||| || ||||| | Sbjct 14714 TTAGAAATCTGCATCCAAAGTAAATGCGTTATCTGCAGGACGTGACATCACACCCATCCT 14655 Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||||||||| | || | ||||||||||||||||| || || || | || ||| || Sbjct 14654 TTGATATTCTCCTACACGCTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCTC 14595 Query 18732 CATAAAATCAAATGGATT 18749 |||||| ||||||||||| Sbjct 14594 CATAAAGTCAAATGGATT 14577 >seq22 Length=1337131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||| || || || || | || ||||| | ||||| || || Sbjct 639712 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 639771 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||| | ||||| | ||||||||||| || |||||||| || ||||| ||| Sbjct 639772 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCTACAGCAGCAAACGCA 639831 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 639832 ACCACTCTTTCACC 639845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| |||||||| |||||||||| || | || ||||| |||||||||||| | Sbjct 644894 ACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 644953 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATT-TTCTTTAAGAATAGGTTCC 19575 || || || ||||| || ||||||| || ||| ||| ||||| | ||||||| Sbjct 644954 TACTGGATTGGAAAGATGACAAATCGATGGGGATTCTTCCTTAAG-AGAGGTTCC 645007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560026193922360