Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq184 215 3e-50 seq1186 105 4e-17 seq1740 98.7 6e-15 seq7643 87.8 1e-11 >seq184 Length=633779 Score = 215 bits (238), Expect = 3e-50 Identities = 384/553 (69%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || ||||| || || || || ||| || || | |||| || | || || Sbjct 23350 TGCCATAGGCATTGACTTGGGCACCACGTACTCCTGCGTCGGAGTTTTCCAGCACGGGAA 23409 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || || ||||| |||||||| || | || ||||| || ||| | ||||| Sbjct 23410 AGTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTACGTTGCCTTTAC 23469 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| ||||| |||||||| || || |||||| || |||||| || Sbjct 23470 GGACACTGAACGGCTTATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCTAACAA 23529 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 ||| || |||||||| || | | ||||| || || || ||||| | || || || || Sbjct 23530 TACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTCGATGACCCTACGGTGCAGTC 23589 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 |||||| || |||||||| ||| | | | | ||| || || | | ||| Sbjct 23590 CGATATGAAGCACTGGCCTTTCCGTGTGGTGAGCGAAGCTGGGAAGCCCAAGGTGCAAGT 23649 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | ||||| || || | || | || ||| ||||||| || ||||| || Sbjct 23650 CGAGTACAAG--GGTGACACCAAGAACTTCTTTCCTGAAGAAATTTCCTCTATGGTATTG 23707 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGA-TGCAGTAA 474743 |||||||||| ||| || ||| | || || || | |||| | || ||| |||| Sbjct 23708 ACCAAAATGAAGGAAATAGCCGAGG-CTTACCTGGGTCGCAAAGTC-CAGAGTGCTGTAA 23765 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || ||||| || ||||| || ||||||||||| || |||||||| || | | Sbjct 23766 TTACTGTACCTGCATACTTCAATGACTCCCAACGTCAAGCCACCAAAGATGCAGGTACCA 23825 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || ||||||| || || || || || |||||||| || || || || || |||| |||| Sbjct 23826 TTACAGGTCTCAACGTATTGCGCATCATTAATGAGCCGACGGCTGCTGCCATTGCCTATG 23885 Query 474864 GTCTTGATAAGAA 474876 || | ||||| || Sbjct 23886 GTTTGGATAAAAA 23898 Score = 158 bits (174), Expect = 8e-33 Identities = 418/634 (66%), Gaps = 6/634 (1%) Strand=Plus/Plus Query 475542 CTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGG 475601 || || |||| |||| || | ||||| || ||||||| |||| ||||| | | Sbjct 24180 CTTCTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTATACATCCATTACCCGTG 24239 Query 475602 CTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAG 475661 || ||||| || | | | |||||||| | || ||||||| || || | | Sbjct 24240 CTCGCTTTGAGGAGCTCAATGCGGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAGG 24299 Query 475662 TTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTT 475721 ||| | ||| |||| || |||||| ||| | ||||||||||||| || || || | Sbjct 24300 CTCTTCGTGATGCTAAGCTAGACAAAGGACAGATTAATGAAATTGTTCTGGTTGGTGGCT 24359 Query 475722 CAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTA 475780 |||| | ||||| || || | | |||| || || | |||||||| ||| || || Sbjct 24360 CAACTCGTATTCCCAAGATCCAAAAGTTGCTC-CAAGATTTCTTTAATGGAAAAGAGCTA 24418 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 || |||| |||||||||||||||| || |||||||| |||||||| || || |||||| Sbjct 24419 AACAAAAGCATAAATCCTGATGAAGCCGTGGCATATGGCGCTGCTGTGCAGGCTGCTATT 24478 Query 475841 TTATCAGGTCAATCAGACGAGAAACTAAATAATA--TTGTACTTGTTGACGTAACTCCAC 475898 | ||| | || | ||||| | || | | | || |||| ||| | |||| Sbjct 24479 CTGATGGGTGA--CAAATCAGAAAATGTGCAAGACCTCCTGCTGCTTGATGTAGCACCAC 24536 Query 475899 TTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTC 475958 |||| | ||| |||| || | ||| || | |||||| | || | | || || Sbjct 24537 TTTCTCTGGGTATTGAGACCGCTGGTGGTGTGATGACTGCCTTAATCAAGCGCAACACAA 24596 Query 475959 CTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018 |||| || ||| || | | || | || ||||| || || || | | ||| Sbjct 24597 CTATTCCCACCAAGCAAACCCAGACCTTCACTACCTATTCAGACAACCAGAGTAGTGTGC 24656 Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078 | ||| | | ||| ||||| ||| | || || || || || || || | | Sbjct 24657 TGGTACAAGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAACAATCTGCTGGGCAAGT 24716 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 || | || ||||||||| ||||| || | || || || |||||||| || || || | Sbjct 24717 TTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTGACATTCG 24776 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 | || |||||||| ||||| || ||||||||||| Sbjct 24777 ACATAGATGCAAACGGTATCCTCAATGTTACTGC 24810 >seq1186 Length=256696 Score = 105 bits (116), Expect = 4e-17 Identities = 139/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | ||| | || | |||||| |||||| | ||||| Sbjct 208029 AAGTAGCATAGAATTAGTGACTTGCCCATATAATTCCTGTTGTTTTGCAGCATAGGATAA 208088 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 208089 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTAAAATCAAA 208148 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | ||||| || || | Sbjct 208149 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTCATAGAAGAAAT 208204 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 208205 TGCCAGTGAATTT 208217 >seq1740 Length=166013 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || |||||||| ||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 129004 GGCATTCCTCCAGCTCCCAGAGGTGTCCCTCAGATTGAAGTCACCTTTGATATTGATGCC 129063 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || |||||| |||| |||||| Sbjct 129064 AATGGCATCCTCAATGTTTCTGCCGTTGATAA 129095 Score = 96.9 bits (106), Expect = 2e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| || || ||||| ||||| || || || || ||||||| Sbjct 126154 ATGCCGTGGTCACAGTCCCAGCTTACTTCAATGACTCTCAGCGCCAGGCCACGAAAGATG 126213 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || || ||||| | || ||||||||||| ||||| ||||| || Sbjct 126214 CCGGAACCATTGCTGGCCTCAATGTGCTCCGAATTATTAATGAGCCAACTGCAGCTGCGA 126273 Query 474855 TTGCTTATGGTCTTG 474869 ||||||| || |||| Sbjct 126274 TTGCTTACGG-CTTG 126287 >seq7643 Length=26413 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | |||||| || |||||||||||||| || | | || Sbjct 24764 TTGTAGTCAGAAAGGGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGC 24705 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||| |||||||||||||| || || |||||| ||||| || ||| Sbjct 24704 TGATCAGGAGGAATGCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCAATGGTGTCA 24645 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || ||||| || || || || || | ||||| ||||| || || Sbjct 24644 CTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTTAAGGTCTTCACGAAGATCTG 24589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3255465208762052