Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq392 181 1e-40 seq1593 129 7e-25 >seq392 Length=717314 Score = 181 bits (200), Expect = 1e-40 Identities = 580/888 (65%), Gaps = 29/888 (3%) Strand=Plus/Minus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | |||||| ||| || |||||| | | || ||| Sbjct 24227 ATCAAACTTGTTGGCAAAAAAATGATGC---TTCCGTAACATCCAACTCAAGTCTCCCAC 24171 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || ||||| || || ||||| || || || | || || | Sbjct 24170 TCCAAAGACACATACAGAACGGACGTGAACTCCACTGCAAGGTGGGTAAGGAGCACCCTT 24111 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||||||||| |||| |||||||| || |||| || | || | ||| ||||| Sbjct 24110 GGATACATCCCCCTCAAAGTAATGCCACTTCACAAACCGAGCAACGGCATTCATATCGGA 24051 Query 162300 GGTGTCGTACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||||| |||| ||||| | | || || |||||||| | || | || ||| | | Sbjct 24050 AACATCGTATTTGT-CACTGGCAGAGACTGCACCAGGAACTTCAGGGATTCGCTGAATTG 23992 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 ||||||| | | ||| || ||||| ||||| || || | ||| || || || | | || Sbjct 23991 TAGCCCATAAATATTCATCAGGACTGTACGTGTCTTTAGCCCATTCTATAAAAGCAC-GA 23933 Query 162419 CCGTT----TTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCG 162474 || || || ||| | || || | ||| || |||| ||| || || Sbjct 23932 ATTTTGCTGTTCTCTAATACA---TATTCCACAAATTCCCTAGTAACAACAAAATAGGCA 23876 Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 || ||||| || | |||| || | ||| || ||| ||| ||| | | || | Sbjct 23875 CTTCCAGAGAAAATGGGTGTGTTGAGAGGTGGATGCTGTTTATCTATCTGCATATTTTTT 23816 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG- 162593 ||| | || || || ||| | || ||| |||| || || |||| || | || || Sbjct 23815 ACCTTGCCATCAACTACCTCATGATGTTTCTTCCATCTCACC-TCTT--TGTTTGAAGGC 23759 Query 162594 --GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCT 162651 | ||| || |||| ||| || ||| | ||| |||| || ||| || ||| Sbjct 23758 ATTTTTTCCGTTTCTAAACTATTTTCACCGTTGAGGGCTTTCAACTTCTCCACAATTTCT 23699 Query 162652 AGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACG 162711 |||| ||||| | || || || |||| |||||||| || | || ||||| |||| Sbjct 23698 TGATTTGTCTTGATTGGGAAATCCATGCCACAGAGATTGATCAAGTACTTCCAGCTAACA 23639 Query 162712 CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCG 162771 | | | | ||||||| | ||||| || || || || || || ||||| || || Sbjct 23638 TTCCTCCTGCAGAGATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCA 23579 Query 162772 TACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831 ||||| || || ||||| |||| | |||||||||| ||||| || | ||||| Sbjct 23578 TACACTACACTTTCCAATTGGCTGGCAATGAAGACATTGTGAAAACATGATGCAATCCCT 23519 Query 162832 ATCAC----GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGT-ATA 162886 | || | | || ||| | ||| | || | || || || | ||||| ||| Sbjct 23518 TTTACAGCTGCCAAGAAAGACTCTGGGGAC----TTTTTGTCAACATGAATGCAGTAATA 23463 Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946 | || ||||| ||||| |||| ||||| | |||||| | ||| | || ||||| || Sbjct 23462 G-TTTTGAGGAGCGTATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATGAG 23404 Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 |||| || ||||| || ||||| || || || || || | || |||| Sbjct 23403 CCACAATTGAATATGCAATGGGAAATTCTGCTTCTTCTTGGCTAAGAG 23356 >seq1593 Length=250849 Score = 129 bits (142), Expect = 7e-25 Identities = 178/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 ||| |||| | |||||||| || || ||||| | ||| || || ||||| ||||| Sbjct 87262 CAGGTCCTTCATGCAGTTCAGGTCAGCTTGGACCCTCGACCAAGAGGCATACACCACGCT 87321 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 |||| | ||| || | ||| ||||||||||| || || || || ||| ||||| Sbjct 87322 CTCCTGCTTAGAAGCCAGAAAAACATTGTCGAAGCAGGAGACAATGCCCTGAACGGCTTT 87381 Query 162843 TGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | ||| | | | | ||| || || ||||| || ||||||| |||||||| || | Sbjct 87382 TTGGAAAAGCTTGGGAGATTTGCTGTCCACGTGGACACAGTATACGTTCTGAGGAGCAAA 87441 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||| || ||||| || ||||||||||| ||||| | || | ||| || ||||| || Sbjct 87442 GATGGCTCTTAGTAACCTTTCGAACATCTCAATCTTCTCATGGATCACCATGGAATAAGC 87501 Query 162963 TATGGGGAA 162971 || ||||| Sbjct 87502 AATAGGGAA 87510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576288916670400