Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1703 109 4e-19 seq2566 107 2e-18 seq22 98.7 8e-16 >seq1703 Length=211135 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| || || || || ||| | || ||||||||| ||| ||||||||||| || Sbjct 100812 ATGGCTTTACCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAATGGTGAACTCTCT 100753 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| |||||||| | || || ||||||||||| || || || || |||||||| ||| Sbjct 100752 TGTCAGTTGTATCAGCGTTCTGGAGACATGGGACTGGGAGTACCTTTCAACATAGCTAGT 100693 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || | || || || | |||||||| || ||||| Sbjct 100692 TACTCACTTCTTACTTCAATGATTGCCCATGTTAC 100658 >seq2566 Length=113286 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || ||||| || |||||||| || || |||||| Sbjct 13056 GGCGAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCG 13115 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||||||| | |||||||||||| | ||||||||| | || ||||| |||||| | Sbjct 13116 TCAATATTTTGGCTGAAGAAACGAGGTCTAATGCCTGGGCTTACTTTTTCTAATGAGCTG 13175 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 13176 ATCAGTAGAGATGA 13189 Score = 105 bits (116), Expect = 5e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| ||||| Sbjct 8194 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCG 8253 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 ||||| |||||||| ||||| || Sbjct 8254 TCATTCTGGACAGCTGAAGAGGT 8276 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| ||||| || |||||||||| || || || |||||||| Sbjct 14577 AATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAGACTAATTTCTTTGAAAAG 14636 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGTGACAATAA---ATTTACT 44611 || || ||||||||||| | ||||| || ||| | || |||| ||||||| Sbjct 14637 CGTGTAGGAGAATATCAAAGGATGGGTGTGATGTCACGTCCTGCAGATAACGCATTTACT 14696 Query 44612 ACGGATGAAGATTTCTAA 44629 ||||| |||||||||| Sbjct 14697 TTGGATGCAGATTTCTAA 14714 >seq22 Length=1337131 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | |||||||| || ||||| ||||| || || || | ||||||||| Sbjct 642747 CAAGAAGTGCAAATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGATATCAATAGAAAAT 642688 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||||||| || ||||||||| | | ||||| || ||||||||||| Sbjct 642687 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACTTACATCAAAGA 642641 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || |||||||| | ||| |||||||| |||||||| || | ||||| Sbjct 639845 GGTGAAAGAGTGGTTGCGTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGTGCTTTTGCA 639786 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| || ||||| || | || || || || || | Sbjct 639785 GCCATATTTTGGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAACGAACTT 639726 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 639725 ATTAGCAGAGATGAAG 639710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396020244725995