Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7643 190 2e-43 seq25499 129 7e-25 seq144 104 3e-17 seq4 84.2 2e-11 >seq7643 Length=26413 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || |||||||| || || || ||||| ||| || | Sbjct 24357 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCAAG 24416 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| ||||||| || || ||||||||||| || |||||||||||||| Sbjct 24417 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCA 24476 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 24477 ACAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAA 24536 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| ||||||| | ||||| Sbjct 24537 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 24584 Score = 114 bits (126), Expect = 1e-20 Identities = 154/218 (71%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 24814 ATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 24873 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || || |||||||||||| Sbjct 24874 GACACCATTGAGAATGTGAAGGCCAAGATCCAN--------------TCCTCCAGACCAA 24919 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 24920 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 24979 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || || || ||| ||||||| Sbjct 24980 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGTCT 25017 >seq25499 Length=1430 Score = 129 bits (142), Expect = 7e-25 Identities = 160/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||| || | || || ||||| || || || ||| | | | ||| Sbjct 387 ATGCAGATCTTCATCAATACCTTAACTGGGAAGACCATCACCCTGGAGTTGAAACCCGGT 328 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || |||| | || || || |||||||| ||||| || ||||| |||||||| Sbjct 327 GACACCACTGAAAATCTCAATGCCAAGATTCAGGATAAGGAAGGCATTCCGCCAGACCAA 268 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||||| ||||| || || |||||||| | ||| | ||||| | Sbjct 267 CAGAGGCTGATCTTTGCTGA-AAGCAGCTGGAAGATGATCGCATCCTCTCTGACTACAGC 209 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||| ||||||||||| || ||||| ||| ||| ||| Sbjct 208 ATCCCAAAGGAATCCATCCTCCATCTTGTCCTGCATCT 171 >seq144 Length=1518462 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || ||||| |||||||| || || || |||||||| ||| || | Sbjct 573670 AATGCAGATTTTTGTGAAAACGCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAG 573611 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | |||| |||| ||||||| ||||||||||||||||| || Sbjct 573610 TGACACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAAGG 573566 >seq4 Length=846980 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||| |||||| ||||||||||||| || ||| | ||||||| ||| Sbjct 51309 GGGATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGACGT 51250 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 || || | || ||||| ||||||||| || Sbjct 51249 ACTCTGTCTGATTATAACATCCAAAAGGTAT 51219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568197407096880