Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7643 178 3e-39 seq25499 104 5e-17 >seq7643 Length=26413 Score = 178 bits (196), Expect = 3e-39 Identities = 171/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | |||||| | |||||| Sbjct 24569 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCT 24510 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | |||||||| ||||||| |||||||||||| Sbjct 24509 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTTGTCC 24450 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||||| || || ||||| ||| ||| || ||||| || ||||| Sbjct 24449 TGGATCTTGGCCTTCACATTCTCAATGGTATCA---CTTGGCTCCACCTCTAGGGTGATG 24393 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| ||||| | ||||||||| Sbjct 24392 GTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATTTT 24355 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||||||||| || |||||||| || || | |||||| | |||||| Sbjct 24797 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 24738 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | | || || |||||||||| ||||||||||| Sbjct 24737 TCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCT 24678 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| ||||| || ||||||||| | || ||||| || ||||| ||| Sbjct 24677 TGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 24618 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 24617 TTCCCAGTTAAGGTCTTCACGAAGATCTGCAT 24586 Score = 122 bits (134), Expect = 2e-22 Identities = 152/212 (72%), Gaps = 14/212 (7%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 25011 AGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 24952 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | |||||||| |||||| Sbjct 24951 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCTGGAGGA--------------N 24906 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || ||||| || ||||| ||| Sbjct 24905 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 24846 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 24845 TTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 24814 >seq25499 Length=1430 Score = 104 bits (114), Expect = 5e-17 Identities = 153/213 (72%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||| || ||| ||||| | || || | ||| | | ||||| Sbjct 177 AGGACAAGATGGAGGATGGATTCCTTTGGGATGCTGTAGTCAGAGAGGATGCGATCATCT 236 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| | || ||||| || | |||||||| || |||| |||||||| ||| Sbjct 237 TCCAGCTGCTT-TCAGCAAAGATCAGCCTCTGTTGGTCTGGCGGAATGCCTTCCTTATCC 295 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAGTGATCGT 211081 || ||||| || | ||||| |||||||| | |||||| ||| || ||||| || Sbjct 296 TGAATCTTGGCATTGAGATTTTCAGTGGTGTCACCGGGTTTCAA-CTCCAGGGTGATGGT 354 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || | || || | || | |||||| Sbjct 355 CTTCCCAGTTAAGGTATTGATGAAGATCTGCAT 387 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || || ||||| || || | ||| | | ||||||| Sbjct 404 AGGACAAGATGCAGGGTGGACTCCTTCTGTATGTTGTAGTCAGAGAGGTTGCGTCCATCT 463 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| || | ||||| || | |||||||| |||||| ||||| Sbjct 464 TCCAGCTGCTTTCCAGAAAAGATCAGCCTCTGTTGGTCTAGAGGAATGCCTTC 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154749990237635