Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiophagus_20hannah_20[genbank_20GCA_5F000516915.1_202013-12-11] 296,399 sequences; 1,594,074,654 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq6935 136 6e-27 seq1978 131 2e-25 >seq6935 Length=32064 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| || ||| | || ||| ||||||||| |||||| ||| |||| || || ||| Sbjct 10889 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10830 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | || ||||||| |||||| | ||||| |||||||| ||||| || |||| |||||| Sbjct 10829 CGATTATGTTCCCGGAGCCACAATGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 10770 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || |||| | || || || || | | ||| ||||||||||| | Sbjct 10769 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATATGGGGTGGATAGATCATTTCT 10710 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||| ||||| || | || ||||||||||| || ||||||||||| Sbjct 10709 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 10660 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || || ||||||||||| | || ||||||||||| || ||| || ||| Sbjct 13490 CCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACATTTCCCAGAAGACCT 13431 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || | |||||| ||||| || | || | ||| ||||||| |||||||| ||||| Sbjct 13430 TTCAAGGAGAAGGGAGCGCCAAGTTCAATCATGGTCTCACCAAAGATGGCTCCAGGACGT 13371 Query 8495 GGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553 ||||||| || ||||| | | ||| | |||| ||| || | |||||| ||||| | Sbjct 13370 GGCTTTT-CAATAAGAAGAGCAGGGTATAATTCCATAGCATCAATGTCTCCATAAAGTTC 13312 Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||||| ||||| || || ||||| ||||| Sbjct 13311 TTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 13279 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 |||||||||||||| || ||||| |||||| | || ||| ||| ||| | || Sbjct 9692 CTTACCCCATGTCCAAGACCTTTTGTGAAGCCTGGTCCTTTTTGAGTATCTGTCTTGAAG 9633 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 9632 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 9573 Query 9770 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 9799 ||| |||| | |||| || |||| ||||| Sbjct 9572 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 9542 >seq1978 Length=181997 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| ||| || | | | || ||||||||||||||||||||||| | |||||| Sbjct 47741 TTCACGATTTGGAAGCCGATGGCGCCCCCGAAGGTGCTGGGCTTCCAGTATTCAGGGGAG 47682 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| |||| | | ||| || || | |||||| |||||||||| ||||| ||||| Sbjct 47681 CAGATGGGGTTCCCAAGGAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCGATCATGCTT 47622 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 | || |||||| || ||| || ||| |||||||| | || | | | | ||||| | Sbjct 47621 TGTCCAAAGATGCTGTCGGGGTAGGTCTTCTCCACCAACAGGCCAGGGAAGAACTCCAGA 47562 Query 8531 GCCTCGACGTCTCCGTAAAG 8550 || |||| |||||| || || Sbjct 47561 GCATCGATGTCTCCATACAG 47542 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9069 ATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTG 9128 ||| ||||| | | |||||| || || | | ||| ||||| | || || || || Sbjct 45792 ATCTGGCATTAAGGCATGCCAATGGTAAAGCTGGTTGAACTCCAGAGCGATGCGGTTCTG 45733 Query 9129 GTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCC 9188 |||||||||| | |||||||| || ||||||| ||||| ||||| | |||||||| Sbjct 45732 GTACTGGAACTGGGACCCAAAGAGAAGGTCGGGCTCAAACATCAGCTTCAGGTGGTAGCC 45673 Query 9189 GCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 |||||| ||||| || || | | | || ||| ||||| || || || Sbjct 45672 GCTGAGATGCTGGACATAATCCTCAATGACAATTTTGATCGTCTCACC 45625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714220780416960