Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq236318 86.0 6e-12 seq15708 84.2 2e-11 >seq236318 Length=20466 Score = 86.0 bits (94), Expect = 6e-12 Identities = 99/131 (76%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 16625 TCTTCATCCAATGAAAATGTGTTATCTTGTTTA--TGA-ACAACACCCATTCTTTGGTAA 16681 ||| ||||||| | |||| ||||||| | ||| | |||||||| ||||| || Sbjct 7746 TCTGCATCCAAAGTGAATGAGTTATCTGCAGGACTTGACATCACACCCATCCTTTGATAT 7687 Query 16682 TCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAA 16741 || | || |||||||| || || ||||| ||||| || ||||| ||||||||||| || Sbjct 7686 TCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCTCCATAAAG 7627 Query 16742 TCAAAAGGATT 16752 ||||| ||||| Sbjct 7626 TCAAATGGATT 7616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||| ||||| || || || || |||||||| || | || ||||| ||||||| Sbjct 6253 ATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTT 6194 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | ||||||||| | || || || ||||||||||| || || || || | |||| Sbjct 6193 TCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAA 6134 Query 17103 ACGCGATTAATCGTTC 17118 | || | || ||||| Sbjct 6133 ATGCTACTACACGTTC 6118 >seq15708 Length=5494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || |||||||| ||||||||||| || || || | || ||||| |||| ||||| Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 | ||||||||| || || || | ||||||||||| || || ||||| | |||||||| Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGC 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511827238665600