Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 86.0 6e-12
seq15708 84.2 2e-11
>seq236318
Length=20466
Score = 86.0 bits (94), Expect = 6e-12
Identities = 99/131 (76%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 16625 TCTTCATCCAATGAAAATGTGTTATCTTGTTTA--TGA-ACAACACCCATTCTTTGGTAA 16681
||| ||||||| | |||| ||||||| | ||| | |||||||| ||||| ||
Sbjct 7746 TCTGCATCCAAAGTGAATGAGTTATCTGCAGGACTTGACATCACACCCATCCTTTGATAT 7687
Query 16682 TCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAA 16741
|| | || |||||||| || || ||||| ||||| || ||||| ||||||||||| ||
Sbjct 7686 TCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCTCCATAAAG 7627
Query 16742 TCAAAAGGATT 16752
||||| |||||
Sbjct 7626 TCAAATGGATT 7616
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042
|| |||| ||||| || || || || |||||||| || | || ||||| |||||||
Sbjct 6253 ATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTT 6194
Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102
|||| | ||||||||| | || || || ||||||||||| || || || || | ||||
Sbjct 6193 TCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAA 6134
Query 17103 ACGCGATTAATCGTTC 17118
| || | || |||||
Sbjct 6133 ATGCTACTACACGTTC 6118
>seq15708
Length=5494
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047
|| |||||||| ||||||||||| || || || | || ||||| |||| |||||
Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370
Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106
| ||||||||| || || || | ||||||||||| || || ||||| | ||||||||
Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGC 5311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511827238665600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |