Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq139421 96.9 2e-15 seq224643 91.5 1e-13 seq75731 86.0 4e-12 >seq139421 Length=9021 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || || ||||| ||||| | ||| || || ||||| ||||| || |||||||||| Sbjct 6205 CTTTGTACTCAGCTCCAAAATGTCGCCATTGGAAGCCATAAACAGGACCGAGATCTCCTT 6264 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| | |||| || |||| ||||| ||| | ||| ||||| |||||||||| Sbjct 6265 CCTCTCTAGAAAAAAATCCTTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAA 6324 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || || || |||||||| Sbjct 6325 TCTTAACTCCCTTAGCAGAAAGCTCTTT 6352 >seq224643 Length=12529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||| ||||||| | ||||||| |||||||||||| || |||| ||||||||| ||||| Sbjct 5707 AAGTCTGTATTTTTTAAGATCAATTTCTGGAAAAAATGTATCACTTTCAAAGTCATGCAT 5766 Query 4116 GATCCTAGTCACAAACAGTT 4135 || || ||||||||||||| Sbjct 5767 AATTCTTGTCACAAACAGTT 5786 >seq75731 Length=14561 Score = 86.0 bits (94), Expect = 4e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| || || || || | |||||||||| ||||||||| || | |||||||| Sbjct 2186 CTTCAGTTCTTTACTAAGTACTATATTAATTCTGTTTTTTAAAGGACGATGTTTCTCAGG 2245 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || |||||||||||||| ||||||| || || | ||| || || Sbjct 2246 GATGGAGAACCAAGTCTTCCTACCCATTATGACCACATTTTGCTT 2290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357359522103920