Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq139421 96.9 2e-15
seq224643 91.5 1e-13
seq75731 86.0 4e-12
>seq139421
Length=9021
Score = 96.9 bits (106), Expect = 2e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| || || ||||| ||||| | ||| || || ||||| ||||| || ||||||||||
Sbjct 6205 CTTTGTACTCAGCTCCAAAATGTCGCCATTGGAAGCCATAAACAGGACCGAGATCTCCTT 6264
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| ||||| | |||| || |||| ||||| ||| | ||| ||||| ||||||||||
Sbjct 6265 CCTCTCTAGAAAAAAATCCTTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAA 6324
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180
| | || || || || ||||||||
Sbjct 6325 TCTTAACTCCCTTAGCAGAAAGCTCTTT 6352
>seq224643
Length=12529
Score = 91.5 bits (100), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||| ||||||| | ||||||| |||||||||||| || |||| ||||||||| |||||
Sbjct 5707 AAGTCTGTATTTTTTAAGATCAATTTCTGGAAAAAATGTATCACTTTCAAAGTCATGCAT 5766
Query 4116 GATCCTAGTCACAAACAGTT 4135
|| || |||||||||||||
Sbjct 5767 AATTCTTGTCACAAACAGTT 5786
>seq75731
Length=14561
Score = 86.0 bits (94), Expect = 4e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| || || || || | |||||||||| ||||||||| || | ||||||||
Sbjct 2186 CTTCAGTTCTTTACTAAGTACTATATTAATTCTGTTTTTTAAAGGACGATGTTTCTCAGG 2245
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394
|| |||||||||||||| ||||||| || || | ||| || ||
Sbjct 2246 GATGGAGAACCAAGTCTTCCTACCCATTATGACCACATTTTGCTT 2290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357359522103920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |