Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq236318 120 4e-22 seq15708 107 2e-18 seq448373 95.1 1e-14 seq85828 93.3 5e-14 >seq236318 Length=20466 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||||||||| | || || ||||| || ||||| |||||||| || || || | Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131 Query 24277 C 24277 | Sbjct 6130 C 6130 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| ||||||| || ||||||||||| || || ||||| | |||||||||||| Sbjct 884 CACCTCTTCAGCTGTCCAGAAGGATGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 825 Query 24692 ATATTGAATTGGAAAAATAACAAA 24715 |||||||| |||||||| ||||| Sbjct 824 GTATTGAATAGGAAAAATGACAAA 801 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 23784 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGA-TTGTCTTCTTGA---GACATAACTCC 23839 || ||||| || || |||| |||| || ||| || ||| | || ||||| || || Sbjct 7758 TTCCTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACC 7700 Query 23840 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATAT 23899 ||| |||| ||||| || ||||||||||| || |||||||| || ||||| | || || Sbjct 7699 CATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGAT 7640 Query 23900 ATTTTCCATGAAATCGGATGGATT 23923 ||| ||||| || || ||||||| Sbjct 7639 ATTCTCCATAAAGTCAAATGGATT 7616 >seq15708 Length=5494 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| ||||| | ||||||||| || || || || ||||||| || | ||| || Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||||| ||||| | ||||||||||| || ||||| || || ||||| ||| Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 5309 ACCACTCTTTCACC 5296 >seq448373 Length=3962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 ||||| | ||| || ||||||||||| || || || || || || | ||||| || ||| Sbjct 2455 CTAAAGACTTTCTTCGTTTCTTTGTGCAGGTTGGAGACCGCGATGCGTGCGGCCAGGATG 2514 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 ||||| || || | | || || ||||||||| | || || | ||| ||||||| | Sbjct 2515 GCATAGTCGGGGTACTTGGTTGTGAGAGTGGCTGCCGTCTCAGCCGCCAGTGTGTCCAGT 2574 Query 54890 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 || ||||| || || ||| | || | || ||||| |||||||| | |||| Sbjct 2575 TCGACCGTGGTCACCCCACTGTACAGACCCTGGATCACCTTCATGGTGATTT 2626 >seq85828 Length=2831 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || || ||| ||| | || || || || ||||| | Sbjct 452 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGCTCCGCAATGTGGATGT 393 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || || ||||||||||| |||||||| || ||||| || | ||| |||| Sbjct 392 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGATGGTCT 333 Query 52995 TTTGTGGAATTTCCCA 53010 | || | || ||||| Sbjct 332 TCTGCGAGATCTCCCA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587161570041600