Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq139421 84.2 3e-11 >seq139421 Length=9021 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCAT-GTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||||| || | ||||| | ||| |||| | || || ||||| || ||||||||||| || Sbjct 4534 AGGCCTGTAACATGGGCAATCATTGTAG-TAAGAAGTGAGTAACTAGCTATGTTGAAAGG 4592 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC 145868 || ||||| |||||||| || || ||||| |||| ||| || ||||| || || Sbjct 4593 AACTCCCAGTCCCATGTCTCCAGAACGCTGATACAACTGACAAGAGAGTTCACCATTTAA 4652 Query 145869 CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGC 145913 | ||| |||||||| || ||||| || || | ||||| || Sbjct 4653 AATGTAAAACTGGCAGAGAGCATGGCATGGAGGTAAAGCCATTGC 4697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583557041436800