Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 125 6e-24
seq24600 105 6e-18
seq433667 87.8 1e-12
>seq311453
Length=2514
Score = 125 bits (138), Expect = 6e-24
Identities = 164/226 (73%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| |||| || | |||||||||||| || ||||| ||||| | |
Sbjct 167 CCCCTC--AGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGA 224
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
|||| || |||| |||||||||||||| ||| | || || ||||||||||| || |
Sbjct 225 GGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAA 284
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
|||||| ||||| |||||| || || | | | || |||| ||| ||| |
Sbjct 285 TGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCT 344
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||| ||| ||||| || || || || || |||||||| || |||||
Sbjct 345 CCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390
Score = 104 bits (114), Expect = 2e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||| |||||||| ||||| ||||| | || || || | || |||| || || ||
Sbjct 422 GTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAATTGCTTCCCA 481
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || || ||||||||||| || | |||||||||||| |||||| ||
Sbjct 482 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 541
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || |||| ||||||| || | ||| ||||| || ||||| || ||
Sbjct 542 ACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 601
Query 21159 TTGACAAATATTTGCATTTT 21178
|| ||||| || ||||||||
Sbjct 602 TTCACAAAGATCTGCATTTT 621
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080
|| |||||||||||||| ||| | || || ||||||||||| || | ||||||||||
Sbjct 8 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTG 67
Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140
|| |||||| || || | | | || |||| ||||||| || | || |||
Sbjct 68 TCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTATG 127
Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || ||||| || || |||||||| ||||||||
Sbjct 128 GTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162
>seq24600
Length=2898
Score = 105 bits (116), Expect = 6e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||||||||| || ||||| ||||| | ||||| || | || |||| || |||||
Sbjct 469 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAATTGCTTGCCG 528
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | |||||||| || || | |||||||||||| ||| || |||
Sbjct 529 GCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 588
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | || |||| |||||| |||| ||||||||||||||| || || ||
Sbjct 589 ACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTC 648
Query 21159 TTGACAAATATTTGCATTTTGAATCT 21184
|| ||||| || ||||| || ||||
Sbjct 649 TTCACAAAGATCTGCATCTTTTATCT 674
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||||||||| || ||||| ||||| | ||||| || |||| |||||||| || ||
Sbjct 8 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 67
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || || ||||| ||||| || | |||||| ||||| ||| || |||
Sbjct 68 GCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTC 127
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | || |||| |||||| || | |||||||||||| || || || ||
Sbjct 128 ACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTCAAGGTC 187
Query 21159 TTGACAAATATTTGCAT 21175
|| ||||| || |||||
Sbjct 188 TTCACAAAGATCTGCAT 204
>seq433667
Length=2244
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||||||||| || ||||| ||||| | ||||| || | || ||||||||||||||
Sbjct 135 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCA 76
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091
||| | || || |||||||| || || | |||||||||||| ||||||
Sbjct 75 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 417710296646720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |