Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq139421 96.9 2e-15 >seq139421 Length=9021 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || || ||||||||||| | ||||||||| ||||||||||| || || |||||||| ||| Sbjct 6210 TACTCAGCTCCAAAATGTCGCCATTGGAAGCCATAAACAGGACCGAGATCTCCTTCCTCT 6269 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 ||| | | || || | || ||||| | || ||| ||||| ||||||||||| | Sbjct 6270 CTAGAAAAAAATCCTTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAATCTTA 6329 Query 97522 ACACCAGATGCTGCAAGCTCTTT 97544 || || || | ||||||||| Sbjct 6330 ACTCCCTTAGCAGAAAGCTCTTT 6352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343048173994400