Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq121033 150 3e-31
>seq121033
Length=27437
Score = 150 bits (166), Expect = 3e-31
Identities = 136/171 (80%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944
|||||| |||| ||||||| |||||| ||||| |||||||| || || |||| || |
Sbjct 12627 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAAT 12686
Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004
||| ||||| || || || ||||||||||| |||||||||| || || ||||| |||||
Sbjct 12687 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATTAGTTTTCTTCATGTCTATCACCATTT 12746
Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055
|||||||||||| || | ||| | || || |||||| |||| ||||| ||
Sbjct 12747 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACA 12797
Score = 104 bits (114), Expect = 4e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
||||||||||||||||| ||||| |||| || |||||| | ||||||| || |||||
Sbjct 14633 GCATTTTTTGGAGCTCATATAAATGCTTTCATTCATGTTGTCATGTACATGTACTATGGA 14692
Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176
| || || ||||| || | |||| |||||| || ||||||||| | || | || |||
Sbjct 14693 CTAGCTGCCTGTGGCCCAAAGTTCCAAAAGTACCTTTGGTGGAAAAGATACTTGACCATA 14752
Query 52177 ATGCAGTTGGTA 52188
||||| || |||
Sbjct 14753 ATGCAATTAGTA 14764
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248
|||||||| | |||| || || || || |||| ||||| || ||||| || |||||
Sbjct 16315 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGTCCCTTTCCT 16374
Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308
|||||||| || ||| || ||| ||||| | | | ||| || | ||||||||||||
Sbjct 16375 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 16434
Query 52309 TTCTATTTTAGAACATACAAGA 52330
||||| | | | ||||||||||
Sbjct 16435 TTCTACTATCGGACATACAAGA 16456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 912996398556800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |