Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq121033 150 3e-31 >seq121033 Length=27437 Score = 150 bits (166), Expect = 3e-31 Identities = 136/171 (80%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| ||||||| |||||| ||||| |||||||| || || |||| || | Sbjct 12627 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAAT 12686 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||| ||||| || || || ||||||||||| |||||||||| || || ||||| ||||| Sbjct 12687 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATTAGTTTTCTTCATGTCTATCACCATTT 12746 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 |||||||||||| || | ||| | || || |||||| |||| ||||| || Sbjct 12747 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACA 12797 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||||||||| ||||| |||| || |||||| | ||||||| || ||||| Sbjct 14633 GCATTTTTTGGAGCTCATATAAATGCTTTCATTCATGTTGTCATGTACATGTACTATGGA 14692 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | |||| |||||| || ||||||||| | || | || ||| Sbjct 14693 CTAGCTGCCTGTGGCCCAAAGTTCCAAAAGTACCTTTGGTGGAAAAGATACTTGACCATA 14752 Query 52177 ATGCAGTTGGTA 52188 ||||| || ||| Sbjct 14753 ATGCAATTAGTA 14764 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 |||||||| | |||| || || || || |||| ||||| || ||||| || ||||| Sbjct 16315 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGTCCCTTTCCT 16374 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| || ||| ||||| | | | ||| || | |||||||||||| Sbjct 16375 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 16434 Query 52309 TTCTATTTTAGAACATACAAGA 52330 ||||| | | | |||||||||| Sbjct 16435 TTCTACTATCGGACATACAAGA 16456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912996398556800