Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq410886 100 3e-16 seq355047 100 3e-16 seq311453 100 3e-16 seq19119 98.7 1e-15 seq249798 82.4 9e-11 >seq410886 Length=983 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 374 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 315 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 314 ATACTAACGAGGA 302 >seq355047 Length=665 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 60057 AAAAATTT---TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| ||||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 203 AAAAATTTACCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 144 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 143 TACTTACCACTATACTAACGAGGA 120 >seq311453 Length=2514 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| || | ||| | ||| |||||||| || ||||| || | Sbjct 392 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAG 451 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | ||||| ||||| || || || | ||||||||||| || Sbjct 452 AGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGG 511 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| ||| || |||| || | | ||||| || | ||||| Sbjct 512 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 571 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | ||||||||||| || || | ||||| |||||||| |||||||| Sbjct 572 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || |||| || ||||| || ||||| || Sbjct 199 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAA 258 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||||| || | || || |||||| ||| || |||| | Sbjct 259 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATT 318 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | |||||| || | ||||||||||| || || | ||||| || Sbjct 319 TTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGAC 378 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 379 AAAGATCTGCAT 390 >seq19119 Length=31651 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 8181 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 8240 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 8241 TATACTAACGAGGA 8254 >seq249798 Length=1584 Score = 82.4 bits (90), Expect = 9e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATAC 60128 ||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 461 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATAC 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565499587337600