Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq236318 122 8e-23 seq15708 105 6e-18 seq330600 102 7e-17 >seq236318 Length=20466 Score = 122 bits (134), Expect = 8e-23 Identities = 116/147 (79%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 16246 ACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAG 16305 |||| || || | || || ||||| || | ||| || ||||| ||||| || |||||||| Sbjct 6260 ACAA-GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAG 6202 Query 16306 TCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAAC 16365 |||||||| || | ||||||||| | ||||| || ||||||||||| || |||||||| Sbjct 6201 ACCTCGTTTCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 6142 Query 16366 TGCGGCAAATGCAACCAATCGCTCACC 16392 ||| |||||||| || | || ||||| Sbjct 6141 TGCAGCAAATGCTACTACACGTTCACC 6115 Score = 102 bits (112), Expect = 7e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| |||||||| || ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 4401 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGCAATCTG 4342 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||| ||| Sbjct 4341 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTATTTC 4303 >seq15708 Length=5494 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | ||||| || || ||||| |||||||||| |||| || | Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||||||||| || ||||| | |||||||||||| || ||||| || || ||||| | Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312 Query 16377 CAACCAATCGCTCACC 16392 |||||| || ||||| Sbjct 5311 CAACCACTCTTTCACC 5296 >seq330600 Length=855 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||||||| ||||| || ||| || |||| ||| | |||||||||| | | || Sbjct 760 AAAAATCAGCATCTAAAGTAAATACCTTATTATTTGCTTGGGACATAACTGCAAAATGTT 701 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| ||| | ||||||||||| ||||||||||| | ||||| || |||| Sbjct 700 GATATTCTGAAACCCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTCTCCA 641 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | || |||||||| |||| || Sbjct 640 TGAAGTCAAAAGGGTTTTCTG 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457401704912000