Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq9417 398 5e-106
seq125410 105 5e-18
>seq9417
Length=10854
Score = 398 bits (440), Expect = 5e-106
Identities = 703/1009 (70%), Gaps = 32/1009 (3%)
Strand=Plus/Plus
Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA--AG-TTCATACAG 107684
||| | ||| |||||| || ||| || |||||| | |||||| || || | |
Sbjct 8867 TACTTGAACCTAACCAAGGATTGTCAGAACTTCAAAG---AAAGGAGAAGATTTGTTGGG 8923
Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744
||| ||||| |||| || | ||||||| ||||| || || |||||| ||||||||
Sbjct 8924 TTCTACCTGAGCGAAGAGGAAGAAAACTTCCCTATTGCTTATTCCATGGTGATCCATGAG 8983
Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804
|| || || | |||||| || | ||| || || | | ||| ||||||||| ||||||||
Sbjct 8984 AATATCGAGATGTTTGAAAGGTTACTGAGATCCATCTTTGCTCCTCAGAACGTATACTGT 9043
Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTT--CAAAGAGGCGGTCAAGGCCATTATTT 107862
||||| ||||| || || || || ||||| |||| || || || ||||||| |
Sbjct 9044 GTCCATGTGGACAGAAAATCTCCTGA-ACTTTTCCAAAAAGCCGTTC-GGGCCATTGCCT 9101
Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922
|||||||| |||||| || |||| |||| || ||||| |||||||| ||||
Sbjct 9102 CCTGCTTCGACAATGTTTTTCTGGCTTCTAAGCAGGAGAGTGTGGTGTATGCCTCTTGGT 9161
Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982
| || || ||||| ||||||||||| ||| | ||| |||| || ||| |||| ||||
Sbjct 9162 CGAGGGTCCAAGCCGACCTGAACTGCATGAAGGACCTGCTTCAAAGCAAGGTGCATTGGA 9221
Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042
|||| | ||||| || || ||||| || ||||| || ||||| || | ||||| |||
Sbjct 9222 GGTACCTCCTGAACACCTGTGGGACCGATTTCCCTATCAAGACGAACACAGAGATCGTCA 9281
Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC- 108101
||||| || || |||| || || |||| ||||| || ||| |||||| ||||
Sbjct 9282 GAGCCCTAAAACTGCTGAACGGGAAAAACAACATGGAATCCGAGAAACCTTC---GTCCT 9338
Query 108102 --aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA 108159
|||| || ||||||||||||| | | || ||||| | | | | ||||
Sbjct 9339 ATAAAAGGAACCGCTGGAAATACCACCACGAAGTGACCAATGCCATCGTTCAGACCAAGG 9398
Query 108160 AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGG 108219
|| ||| ||| || || | || | ||||||||||| || || ||||| ||||||
Sbjct 9399 TGACAAAGAGCCCCCCTCCCCAAAACTCCCCCATGTTCACTGGCAACGCCTACATTGTGG 9458
Query 108220 CCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC---TGGTTG 108276
| | | | |||||||| ||| |||| ||| || | | | ||||| || | |
Sbjct 9459 TCACCAGGGAGTTTGTCCAGCATCTCTT-CACAGACCCGAGTGC--AAGACGCTTGATCG 9515
Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA--GCGTGC 108334
| ||| |||||||||||| ||||| || || || |||||||| ||| | || || |||
Sbjct 9516 AGTGGTCCAAAGACACCTACAGCCCTGATGAGCATCTCTGGGCTACCTTGCATCGCATGC 9575
Query 108335 TCCGTGGATGCCTGGCTCTGTTC---CTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391
| | || |||| ||||| |||| ||||| | ||| | | | || |||||||||
Sbjct 9576 -CAGAGG-TGCCAGGCTCGGTTCCTTCTAGCGA---CAAATTTGATCTCACAGACATGAA 9630
Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451
|||||| ||| || | || |||||| ||| ||| || || ||||||| ||| || ||
Sbjct 9631 TGCCATTGCCCGGGTGGTGAAGTGGGCCTACAGCGAAGGGGACGTCAGCAAGGGAGCCCC 9690
Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511
||| | | || | ||| | | | |||| ||||| | || || || |||||
Sbjct 9691 TTACCCCCAGTGTACCGGAGCCTACAAGCGGGCGGTCTGCGTCTATGGATTTGGAGACCT 9750
Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571
|||| | ||| | || ||||| || || |||||||| ||||| || ||||||||
Sbjct 9751 CCGCTGGCTACTCTCACAGCACCACCTGTTCGCCAACAAGTTCGACCCCAGCGTGGATGA 9810
Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620
||||| | ||||| | |||||||| || || || ||||||||||||
Sbjct 9811 CTACGTCATCCAGTGTCTGGAAGAGTATCTGCGCCACAAGGCCATCTAT 9859
>seq125410
Length=11294
Score = 105 bits (116), Expect = 5e-18
Identities = 227/334 (68%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 107698 AAGAAG-AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAAC 107756
|||||| ||| ||| || |||||||| || || || |||| || | || ||| | |
Sbjct 6161 AAGAAGCAGC-AGAATTTCCCATTGCATATTCAATAGTGGCTTATCATAAAATTAATATG 6219
Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816
|||| | || ||| || || | || || ||||| ||| ||||| | || | |||
Sbjct 6220 CTTGAGAGACTTCTGAGAACCATATACGCTCCTCAAAACTATTACTGCATTCATATTGAT 6279
Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876
|||||||| ||| ||||| | || || || | ||| || || || | ||||
Sbjct 6280 AAAAAGTCCCCGGAGTCTTTCTTGGCAGCAGTAAAAGGGATTGCATCATGTTTTCACAAT 6339
Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936
|||||||| ||||| | |||| || || ||||| || ||| | | || ||||||
Sbjct 6340 GTCTTCATTGCCAGCCAATTGGAAAGTGTAGTGTATGCATCATGGAGCCGGGTACAAGCT 6399
Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCATGGAAGTACTTACTGAA 107995
|| || ||||| || |||| | || || ||| ||| ||||||||||| | ||
Sbjct 6400 GATCTCAACTGCAT-GAAGGATCTCTACAGGAGGAATGTGAGCTGGAAGTACTTGATCAA 6458
Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029
| ||||| || || ||||| || |||||||||
Sbjct 6459 TCTCTGCGGCACGGATTTCCCAATCAAGACCAAT 6492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 344516978578080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |