Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq9417 398 5e-106 seq125410 105 5e-18 >seq9417 Length=10854 Score = 398 bits (440), Expect = 5e-106 Identities = 703/1009 (70%), Gaps = 32/1009 (3%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA--AG-TTCATACAG 107684 ||| | ||| |||||| || ||| || |||||| | |||||| || || | | Sbjct 8867 TACTTGAACCTAACCAAGGATTGTCAGAACTTCAAAG---AAAGGAGAAGATTTGTTGGG 8923 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 ||| ||||| |||| || | ||||||| ||||| || || |||||| |||||||| Sbjct 8924 TTCTACCTGAGCGAAGAGGAAGAAAACTTCCCTATTGCTTATTCCATGGTGATCCATGAG 8983 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 || || || | |||||| || | ||| || || | | ||| ||||||||| |||||||| Sbjct 8984 AATATCGAGATGTTTGAAAGGTTACTGAGATCCATCTTTGCTCCTCAGAACGTATACTGT 9043 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTT--CAAAGAGGCGGTCAAGGCCATTATTT 107862 ||||| ||||| || || || || ||||| |||| || || || ||||||| | Sbjct 9044 GTCCATGTGGACAGAAAATCTCCTGA-ACTTTTCCAAAAAGCCGTTC-GGGCCATTGCCT 9101 Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 |||||||| |||||| || |||| |||| || ||||| |||||||| |||| Sbjct 9102 CCTGCTTCGACAATGTTTTTCTGGCTTCTAAGCAGGAGAGTGTGGTGTATGCCTCTTGGT 9161 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982 | || || ||||| ||||||||||| ||| | ||| |||| || ||| |||| |||| Sbjct 9162 CGAGGGTCCAAGCCGACCTGAACTGCATGAAGGACCTGCTTCAAAGCAAGGTGCATTGGA 9221 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 |||| | ||||| || || ||||| || ||||| || ||||| || | ||||| ||| Sbjct 9222 GGTACCTCCTGAACACCTGTGGGACCGATTTCCCTATCAAGACGAACACAGAGATCGTCA 9281 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC- 108101 ||||| || || |||| || || |||| ||||| || ||| |||||| |||| Sbjct 9282 GAGCCCTAAAACTGCTGAACGGGAAAAACAACATGGAATCCGAGAAACCTTC---GTCCT 9338 Query 108102 --aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA 108159 |||| || ||||||||||||| | | || ||||| | | | | |||| Sbjct 9339 ATAAAAGGAACCGCTGGAAATACCACCACGAAGTGACCAATGCCATCGTTCAGACCAAGG 9398 Query 108160 AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGG 108219 || ||| ||| || || | || | ||||||||||| || || ||||| |||||| Sbjct 9399 TGACAAAGAGCCCCCCTCCCCAAAACTCCCCCATGTTCACTGGCAACGCCTACATTGTGG 9458 Query 108220 CCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC---TGGTTG 108276 | | | | |||||||| ||| |||| ||| || | | | ||||| || | | Sbjct 9459 TCACCAGGGAGTTTGTCCAGCATCTCTT-CACAGACCCGAGTGC--AAGACGCTTGATCG 9515 Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA--GCGTGC 108334 | ||| |||||||||||| ||||| || || || |||||||| ||| | || || ||| Sbjct 9516 AGTGGTCCAAAGACACCTACAGCCCTGATGAGCATCTCTGGGCTACCTTGCATCGCATGC 9575 Query 108335 TCCGTGGATGCCTGGCTCTGTTC---CTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 | | || |||| ||||| |||| ||||| | ||| | | | || ||||||||| Sbjct 9576 -CAGAGG-TGCCAGGCTCGGTTCCTTCTAGCGA---CAAATTTGATCTCACAGACATGAA 9630 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 |||||| ||| || | || |||||| ||| ||| || || ||||||| ||| || || Sbjct 9631 TGCCATTGCCCGGGTGGTGAAGTGGGCCTACAGCGAAGGGGACGTCAGCAAGGGAGCCCC 9690 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 ||| | | || | ||| | | | |||| ||||| | || || || ||||| Sbjct 9691 TTACCCCCAGTGTACCGGAGCCTACAAGCGGGCGGTCTGCGTCTATGGATTTGGAGACCT 9750 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 |||| | ||| | || ||||| || || |||||||| ||||| || |||||||| Sbjct 9751 CCGCTGGCTACTCTCACAGCACCACCTGTTCGCCAACAAGTTCGACCCCAGCGTGGATGA 9810 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 ||||| | ||||| | |||||||| || || || |||||||||||| Sbjct 9811 CTACGTCATCCAGTGTCTGGAAGAGTATCTGCGCCACAAGGCCATCTAT 9859 >seq125410 Length=11294 Score = 105 bits (116), Expect = 5e-18 Identities = 227/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 107698 AAGAAG-AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAAC 107756 |||||| ||| ||| || |||||||| || || || |||| || | || ||| | | Sbjct 6161 AAGAAGCAGC-AGAATTTCCCATTGCATATTCAATAGTGGCTTATCATAAAATTAATATG 6219 Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816 |||| | || ||| || || | || || ||||| ||| ||||| | || | ||| Sbjct 6220 CTTGAGAGACTTCTGAGAACCATATACGCTCCTCAAAACTATTACTGCATTCATATTGAT 6279 Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876 |||||||| ||| ||||| | || || || | ||| || || || | |||| Sbjct 6280 AAAAAGTCCCCGGAGTCTTTCTTGGCAGCAGTAAAAGGGATTGCATCATGTTTTCACAAT 6339 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 |||||||| ||||| | |||| || || ||||| || ||| | | || |||||| Sbjct 6340 GTCTTCATTGCCAGCCAATTGGAAAGTGTAGTGTATGCATCATGGAGCCGGGTACAAGCT 6399 Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 || || ||||| || |||| | || || ||| ||| ||||||||||| | || Sbjct 6400 GATCTCAACTGCAT-GAAGGATCTCTACAGGAGGAATGTGAGCTGGAAGTACTTGATCAA 6458 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 | ||||| || || ||||| || ||||||||| Sbjct 6459 TCTCTGCGGCACGGATTTCCCAATCAAGACCAAT 6492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344516978578080