Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq24600 125 6e-24
seq311453 107 1e-18
>seq24600
Length=2898
Score = 125 bits (138), Expect = 6e-24
Identities = 155/211 (73%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| ||||||||||| || ||| | || ||||
Sbjct 458 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 517
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
||| || ||||| || ||||||| ||| || || ||||| | || ||||||||| |
Sbjct 518 ATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGA 577
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
|||| ||| || | | | | |||| | ||||||||||| |||||| |||||||
Sbjct 578 TTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTGC 637
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
| |||| |||||||||||||| ||||| ||
Sbjct 638 CAGTCAAGGTCTTCACAAAGATCTGCATCTT 668
Score = 118 bits (130), Expect = 8e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| ||||||||||| || ||| |||| ||||| ||
Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
||||| || || |||| || ||||||||| ||||| | || || |||||| |||||
Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | | |||| | ||||||||| | |||||| ||||| || |||
Sbjct 122 GCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTC 181
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
| |||||||||||||| |||||
Sbjct 182 AAGGTCTTCACAAAGATCTGCAT 204
>seq311453
Length=2514
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| ||| || ||| ||||||||| |||||||||||
Sbjct 163 GCCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 222
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| |||| ||||| ||||| || || || |||| || ||| |||||||||||
Sbjct 223 GAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGG 282
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| || || |||||| || || ||| || | | | |||| | |||||
Sbjct 283 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCAC 342
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||| ||| || || || || |||| ||||| |||||||| ||||||
Sbjct 343 CTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCATG 391
Score = 89.7 bits (98), Expect = 4e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||| || ||||||||||| || ||| | || |||| ||| || || || ||
Sbjct 428 TCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAG 487
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|||| || ||| ||||||||||| | || |||||||| || || ||| || |
Sbjct 488 ATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 547
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| | ||||||||| | ||| || || || || |||| |||||||||
Sbjct 548 TCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACA 607
Query 45326 AAGATTTGCATGTT 45339
||||| ||||| ||
Sbjct 608 AAGATCTGCATTTT 621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 390819143762320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |