Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq236318 123 2e-23 seq15708 98.7 9e-16 >seq236318 Length=20466 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||||||||| || || || ||||| || | ||| ||||| | |||||||| | Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||||| || || || || |||||||| ||||| |||||||||||||| | Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131 Query 14346 CTATTAATCGTTCTCC 14361 ||| || ||||| || Sbjct 6130 CTACTACACGTTCACC 6115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| |||||||||| | || | |||||||||||| ||||| || ||| Sbjct 7710 GACATCACACCCATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCT 7651 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||| || ||||| |||||||| ||||||||||| Sbjct 7650 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 7616 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/102 (80%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | ||| |||||| |||||||||||||| ||||||||||| || || || | Sbjct 4415 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATAT 4358 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 | ||||| || ||||| || ||||| ||||| | ||||||| Sbjct 4357 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTG 4316 >seq15708 Length=5494 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| |||||||||||||| || || || | |||||||| || |||| || || Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||||||||| || || || | || |||||||| || || || || ||||||||||| Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGC 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477016163465600