Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 123 2e-23
seq15708 98.7 9e-16
>seq236318
Length=20466
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||||||||| || || || ||||| || | ||| ||||| | |||||||| |
Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||||||||||| || || || || |||||||| ||||| |||||||||||||| |
Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131
Query 14346 CTATTAATCGTTCTCC 14361
||| || ||||| ||
Sbjct 6130 CTACTACACGTTCACC 6115
Score = 95.1 bits (104), Expect = 1e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| |||||||||| | || | |||||||||||| ||||| || |||
Sbjct 7710 GACATCACACCCATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCT 7651
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992
||||| || ||||| |||||||| |||||||||||
Sbjct 7650 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 7616
Score = 89.7 bits (98), Expect = 5e-13
Identities = 82/102 (80%), Gaps = 4/102 (4%)
Strand=Plus/Minus
Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516
||||||| | ||| |||||| |||||||||||||| ||||||||||| || || || |
Sbjct 4415 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATAT 4358
Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
| ||||| || ||||| || ||||| ||||| | |||||||
Sbjct 4357 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTG 4316
>seq15708
Length=5494
Score = 98.7 bits (108), Expect = 9e-16
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287
|||||||| |||||||||||||| || || || | |||||||| || |||| || ||
Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370
Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346
| ||||||||| || || || | || |||||||| || || || || |||||||||||
Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGC 5311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477016163465600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |