Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq39449 129 5e-25 seq311453 105 6e-18 seq321951 98.7 9e-16 >seq39449 Length=2664 Score = 129 bits (142), Expect = 5e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| || ||| |||||||| ||||| ||||| || || ||||| ||||| || | Sbjct 1353 CCACCTCATCATTGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 1412 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || || ||||| || ||||||||||||||||| || | Sbjct 1413 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTG 1472 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | |||||||| ||| ||||| ||||| || Sbjct 1473 TCCCCGTCTCCGTCTGAGACTCAATGATGGC 1503 >seq311453 Length=2514 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| || ||||| |||||| | || || ||||| Sbjct 391 CATGCAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAG 332 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || |||||| |||||| | || |||||||| Sbjct 331 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCA 272 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||||||| |||||||| || | || || || Sbjct 271 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAA 212 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| || ||||| || | |||||||| || Sbjct 211 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGTCTGAGGGGTGG 164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| |||| || ||||| |||||| | || || || || Sbjct 621 AAAATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 562 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || |||||| Sbjct 561 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGAC 502 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || ||||| || || |||||||| ||| | || || Sbjct 501 CAGCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAGACTAC 442 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| ||||| || || ||||| || || | |||||||| || Sbjct 441 AACATCCAAAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| || ||||| || || | || || || || Sbjct 163 CATGCAAATCTTTGTCAAGACCTTGACCGGAAAAACCATAACACTTGAGGTGGAGCCCAG 104 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || ||||||||||||| | || |||||||| Sbjct 103 TGACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 44 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || || |||||||||||| ||||||| Sbjct 43 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGA 8 >seq321951 Length=5427 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || || ||||| ||||| || ||||| || || || || || | | Sbjct 571 TCCACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTC 630 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || ||||||||||| ||||| || | ||| || || | ||| ||||| Sbjct 631 TGCTCCTCCTTCCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAG 690 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | ||| || || || ||||||| Sbjct 691 GGCTCCAGGTAGATGGCGAAGGCCCCGGGTCTCT 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440841127046400