Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq39449 129 5e-25
seq311453 105 6e-18
seq321951 98.7 9e-16
>seq39449
Length=2664
Score = 129 bits (142), Expect = 5e-25
Identities = 119/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| || ||| |||||||| ||||| ||||| || || ||||| ||||| || |
Sbjct 1353 CCACCTCATCATTGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 1412
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
|||||| || ||||||||| || || ||||| || ||||||||||||||||| || |
Sbjct 1413 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTG 1472
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
| |||||||| ||| ||||| ||||| ||
Sbjct 1473 TCCCCGTCTCCGTCTGAGACTCAATGATGGC 1503
>seq311453
Length=2514
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| |||| || ||||| |||||| | || || |||||
Sbjct 391 CATGCAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAG 332
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| ||||| | || |||||| |||||| | || ||||||||
Sbjct 331 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCA 272
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||||||| |||||||| || | || || ||
Sbjct 271 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAA 212
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || ||||| || ||||| || | |||||||| ||
Sbjct 211 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGTCTGAGGGGTGG 164
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || || || ||||| |||| || ||||| |||||| | || || || ||
Sbjct 621 AAAATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 562
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| |||| | ||||| | || |||||||||||| | || ||||||
Sbjct 561 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGAC 502
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || || || ||||| || || |||||||| ||| | || ||
Sbjct 501 CAGCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAGACTAC 442
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| ||||| ||||| || || ||||| || || | |||||||| ||
Sbjct 441 AACATCCAAAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 392
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| || || ||||| |||| || ||||| || || | || || || ||
Sbjct 163 CATGCAAATCTTTGTCAAGACCTTGACCGGAAAAACCATAACACTTGAGGTGGAGCCCAG 104
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| ||||| | || ||||||||||||| | || ||||||||
Sbjct 103 TGACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 44
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || || |||||||||||| |||||||
Sbjct 43 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGA 8
>seq321951
Length=5427
Score = 98.7 bits (108), Expect = 9e-16
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401
|| || ||| |||| || || ||||| ||||| || ||||| || || || || || | |
Sbjct 571 TCCACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTC 630
Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461
|||||| || ||||||||||| ||||| || | ||| || || | ||| |||||
Sbjct 631 TGCTCCTCCTTCCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAG 690
Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||| ||||| | ||| || || || |||||||
Sbjct 691 GGCTCCAGGTAGATGGCGAAGGCCCCGGGTCTCT 724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440841127046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |