Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq236318 123 3e-23 seq15708 98.7 1e-15 seq85828 95.1 2e-14 >seq236318 Length=20466 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | || |||||||| || ||||| |||||||| || || || | Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| || || || || || ||||||||||||||||| ||||||||||| | Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131 Query 33724 C 33724 | Sbjct 6130 C 6130 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 33231 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGA-TTGTCTTCTTGA---GACATAACTCC 33286 || ||||| || || |||| |||| || ||| || ||| | || ||||| || || Sbjct 7758 TTCCTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACC 7700 Query 33287 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33346 ||| |||| ||||| || ||||||||||| || |||||||| || ||||||| || || Sbjct 7699 CATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGAT 7640 Query 33347 ATTTTCCATGAAATCAAACGGATT 33370 ||| ||||| || ||||| ||||| Sbjct 7639 ATTCTCCATAAAGTCAAATGGATT 7616 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| || ||||||||||| || || ||||| | |||||||||||| Sbjct 884 CACCTCTTCAGCTGTCCAGAAGGATGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 825 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||||| || || ||||| ||||| Sbjct 824 GTATTGAATAGGAAAAATGACAAA 801 >seq15708 Length=5494 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | |||||| || || || || || ||||||| || | ||| || Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||||| || || | || ||||||||||| ||||| || |||||||| ||| Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310 Query 33726 ATAAGTCTCTCTCC 33739 | | ||| || || Sbjct 5309 ACCACTCTTTCACC 5296 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || |||||||||||||| |||||||| || | | ||| ||||| Sbjct 2004 AAGTTTTCATTGACAATTCCATCACTGGCAGCAAAAAAAGCTAGGATATGCGAAATAAAG 1945 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072 |||||||| |||||| |||| || ||||||| | | | ||| || || Sbjct 1944 TATTTTTCTTCTGGTTTTAGATTGTTCCAATGAGTAAGATCCTTTGA 1898 >seq85828 Length=2831 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || || ||| ||| | || || || || ||||| | Sbjct 452 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGCTCCGCAATGTGGATGT 393 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || || || ||||||||||| |||||||| || ||||| || | ||| |||| Sbjct 392 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGATGGTCT 333 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG--- 62289 | || | || ||||| | || || || | |||| | || || |||| | || Sbjct 332 TCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTCTGGGA 273 Query 62290 TATTCTGAATGGA 62302 ||||||| | ||| Sbjct 272 TATTCTGGAAGGA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622858745337600