Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 123 3e-23
seq15708 98.7 1e-15
seq85828 95.1 2e-14
>seq236318
Length=20466
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||||||||| | || |||||||| || ||||| |||||||| || || || |
Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| || || || || || ||||||||||||||||| ||||||||||| |
Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131
Query 33724 C 33724
|
Sbjct 6130 C 6130
Score = 93.3 bits (102), Expect = 5e-14
Identities = 109/144 (76%), Gaps = 5/144 (3%)
Strand=Plus/Minus
Query 33231 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGA-TTGTCTTCTTGA---GACATAACTCC 33286
|| ||||| || || |||| |||| || ||| || ||| | || ||||| || ||
Sbjct 7758 TTCCTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACC 7700
Query 33287 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33346
||| |||| ||||| || ||||||||||| || |||||||| || ||||||| || ||
Sbjct 7699 CATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGAT 7640
Query 33347 ATTTTCCATGAAATCAAACGGATT 33370
||| ||||| || ||||| |||||
Sbjct 7639 ATTCTCCATAAAGTCAAATGGATT 7616
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138
||| ||||| ||||||| || ||||||||||| || || ||||| | ||||||||||||
Sbjct 884 CACCTCTTCAGCTGTCCAGAAGGATGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 825
Query 34139 ATATTGGATTGGGAAAATAACAAA 34162
||||| || || ||||| |||||
Sbjct 824 GTATTGAATAGGAAAAATGACAAA 801
>seq15708
Length=5494
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| ||||| | |||||| || || || || || ||||||| || | ||| ||
Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725
||||||||||||| || || | || ||||||||||| ||||| || |||||||| |||
Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310
Query 33726 ATAAGTCTCTCTCC 33739
| | ||| || ||
Sbjct 5309 ACCACTCTTTCACC 5296
Score = 86.0 bits (94), Expect = 8e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|| |||||||| || |||||||||||||| |||||||| || | | ||| |||||
Sbjct 2004 AAGTTTTCATTGACAATTCCATCACTGGCAGCAAAAAAAGCTAGGATATGCGAAATAAAG 1945
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072
|||||||| |||||| |||| || ||||||| | | | ||| || ||
Sbjct 1944 TATTTTTCTTCTGGTTTTAGATTGTTCCAATGAGTAAGATCCTTTGA 1898
>seq85828
Length=2831
Score = 95.1 bits (104), Expect = 2e-14
Identities = 137/193 (71%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172
|||| ||||| || |||||||| || || ||| ||| | || || || || ||||| |
Sbjct 452 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGCTCCGCAATGTGGATGT 393
Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232
| | ||| || || || ||||||||||| |||||||| || ||||| || | ||| ||||
Sbjct 392 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGATGGTCT 333
Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG--- 62289
| || | || ||||| | || || || | |||| | || || |||| | ||
Sbjct 332 TCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTCTGGGA 273
Query 62290 TATTCTGAATGGA 62302
||||||| | |||
Sbjct 272 TATTCTGGAAGGA 260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622858745337600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |