Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 120 3e-22
seq15708 102 8e-17
>seq236318
Length=20466
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| |||||||| || || ||||||||||| || | ||| ||||| | |||||||| ||
Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||||||||| | ||||| || ||||||||||| ||||| || || || |||||||||
Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 6129
Query 11774 ACTACTCTTTCTCC 11787
||||| | ||| ||
Sbjct 6128 ACTACACGTTCACC 6115
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
|| ||||| || | ||||||||||||||||||||||||||| ||||| || || || ||
Sbjct 4397 TAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGCAATCTGGAAG 4338
Query 11960 CCATAGAAACATCGTGCCTCTG 11981
||||||||||| ||||| ||||
Sbjct 4337 CCATAGAAACAGCGTGCTTCTG 4316
Score = 82.4 bits (90), Expect = 7e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 11281 TTAAAAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACACCCCCATCTT 11340
||| |||||| |||| || ||| || ||| | | ||| | ||| |||||| |
Sbjct 7753 TTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGCAGGACTTGACATCACACCCATCCT 7694
Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400
||||||||| | || ||| ||| || ||||||||||| ||||| || || |||| |||
Sbjct 7693 TTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCTC 7634
Query 11401 CATAAAGCTAAAAGGATT 11418
||||||| ||| |||||
Sbjct 7633 CATAAAGTCAAATGGATT 7616
>seq15708
Length=5494
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || ||||| || || || || | || ||||| || |||| || |
Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
| | ||||||||| || ||||| | |||||||||||| || || || ||||| ||||| |
Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 5311 CAACCACTCTTTCACC 5296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463348069484800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |