Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq236318 120 3e-22 seq15708 102 8e-17 >seq236318 Length=20466 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||| ||||| | |||||||| || Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||| | ||||| || ||||||||||| ||||| || || || ||||||||| Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 6129 Query 11774 ACTACTCTTTCTCC 11787 ||||| | ||| || Sbjct 6128 ACTACACGTTCACC 6115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || ||||| || | ||||||||||||||||||||||||||| ||||| || || || || Sbjct 4397 TAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGCAATCTGGAAG 4338 Query 11960 CCATAGAAACATCGTGCCTCTG 11981 ||||||||||| ||||| |||| Sbjct 4337 CCATAGAAACAGCGTGCTTCTG 4316 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 11281 TTAAAAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACACCCCCATCTT 11340 ||| |||||| |||| || ||| || ||| | | ||| | ||| |||||| | Sbjct 7753 TTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGCAGGACTTGACATCACACCCATCCT 7694 Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400 ||||||||| | || ||| ||| || ||||||||||| ||||| || || |||| ||| Sbjct 7693 TTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCTC 7634 Query 11401 CATAAAGCTAAAAGGATT 11418 ||||||| ||| ||||| Sbjct 7633 CATAAAGTCAAATGGATT 7616 >seq15708 Length=5494 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || ||||| || || || || | || ||||| || |||| || | Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||||||||| || ||||| | |||||||||||| || || || ||||| ||||| | Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 5311 CAACCACTCTTTCACC 5296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463348069484800