Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq236318 120 4e-22 seq101076 105 9e-18 seq15708 102 1e-16 seq448373 95.1 2e-14 seq85828 95.1 2e-14 >seq236318 Length=20466 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||||||||| | || || ||||| || ||||| |||||||| || || || | Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131 Query 36300 C 36300 | Sbjct 6130 C 6130 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| ||||| ||||||| || ||||||||||| || || ||||| | |||||||||||| Sbjct 884 CACCTCTTCAGCTGTCCAGAAGGATGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 825 Query 36715 ATATTGAATTGGAAAAATAACAAA 36738 |||||||| |||||||| ||||| Sbjct 824 GTATTGAATAGGAAAAATGACAAA 801 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/144 (75%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 35807 TTTCTTTAAAAATCAACATCTAGAGAAAAATGA-TTGTCTTCTTGA---GACATAACTCC 35862 || ||||| ||||| |||| | || || ||| || ||| | || ||||| || || Sbjct 7758 TTCCTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACC 7700 Query 35863 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATAT 35922 ||| |||| ||||| || ||||||||||| || |||||||| || ||||| | || || Sbjct 7699 CATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGAT 7640 Query 35923 ATTTTCCATGAAATCGAATGGATT 35946 ||| ||||| || || |||||||| Sbjct 7639 ATTCTCCATAAAGTCAAATGGATT 7616 >seq101076 Length=12841 Score = 105 bits (116), Expect = 9e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| || |||| | | | | ||| ||||| |||||||||||||| || Sbjct 1302 TTACTTTTTATTAAATGCTTCTAGCAAACGGAGCAGGTGCAAAAACAGATTGATGATGTC 1361 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| || | |||||| | || | | ||| ||||| || ||||| || || |||| | Sbjct 1362 CAAATAAAGATTGATTGCAGCCAGTATATATTCTTCCGGAGAGAGTTTGTGCATTAATAG 1421 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||| ||||| || ||||| ||||| | ||| || || ||||| | ||||| Sbjct 1422 ATGAGTGTCGTAGATGATAAATCCACAGAACAGAAGTGCTCCTGCAGCAGCAATTACCAG 1481 Query 9407 CTCCACTGTTTCACTTTGCACAAATA 9432 ||| ||| |||| | | | ||||| Sbjct 1482 CTCTACTACTTCATTATTGAAAAATA 1507 >seq15708 Length=5494 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||||| | ||||||||| || || || || ||||||| || | ||| || Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||||| ||||| | ||||||||||| || ||||| || || ||||| ||| Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310 Query 36302 ATAAGTCTCTCTCC 36315 | | ||| || || Sbjct 5309 ACCACTCTTTCACC 5296 >seq448373 Length=3962 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 ||||| | ||| || ||||||||||| || || || || || || | ||||| | ||| Sbjct 2455 CTAAAGACTTTCTTCGTTTCTTTGTGCAGGTTGGAGACCGCGATGCGTGCGGCCAGGATG 2514 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 ||||| || || | | || || ||||||||| | || || ||||| ||||||| | Sbjct 2515 GCATAGTCGGGGTACTTGGTTGTGAGAGTGGCTGCCGTCTCAGCCGCCAGTGTGTCCAGT 2574 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 || ||||| || || ||| | || | || ||||| |||||||| | |||| Sbjct 2575 TCGACCGTGGTCACCCCACTGTACAGACCCTGGATCACCTTCATGGTGATTT 2626 >seq85828 Length=2831 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || || ||| ||| | || || || || ||||| | Sbjct 452 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGCTCCGCAATGTGGATGT 393 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || || ||||||||||| |||||||| || ||||| || | ||| |||| Sbjct 392 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGATGGTCT 333 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG--- 65082 | || | || ||||| | || || || | |||| | || || |||| | || Sbjct 332 TCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTCTGGGA 273 Query 65083 TATTCTGAATGGA 65095 ||||||| | ||| Sbjct 272 TATTCTGGAAGGA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650900648732800