Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq236318 129 8e-25 seq15708 116 5e-21 seq85828 98.7 1e-15 >seq236318 Length=20466 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||||||||| || || || ||||| || ||||| |||||||| || || || | Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131 Query 50102 CAAC 50105 | || Sbjct 6130 CTAC 6127 Score = 93.3 bits (102), Expect = 6e-14 Identities = 109/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 49609 TTTCTTTAAAAGTCAACATCTAGAGAAAAATGA-TTATCTTCTTGA---GACATAACTCC 49664 || ||||| || || |||| | || || ||| |||||| | || ||||| || || Sbjct 7758 TTCCTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACC 7700 Query 49665 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 49724 ||| |||| ||||| || ||||||||||| || |||||||| || ||||||| || || Sbjct 7699 CATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGAT 7640 Query 49725 ATTTTCCATGAAATCAAACGGATT 49748 ||| ||||| || ||||| ||||| Sbjct 7639 ATTCTCCATAAAGTCAAATGGATT 7616 >seq15708 Length=5494 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| ||||| ||||||||||| || || || || ||||||| || | ||| || Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||||| ||||| | |||||||||||||| ||||| || || ||||| ||| Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 5309 ACCACTCTTTCACC 5296 >seq85828 Length=2831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || || ||| ||| | || || || || ||||| | Sbjct 452 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGCTCCGCAATGTGGATGT 393 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || || || ||||||||||| |||||||| || ||||| || | ||| |||| Sbjct 392 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGATGGTCT 333 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG--- 78961 | || | || ||||| | || || || | |||| | || || |||| | || Sbjct 332 TCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTCTGGGA 273 Query 78962 TATTCTGAATGGA 78974 ||||||| | ||| Sbjct 272 TATTCTGGAAGGA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710332648028800