Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq39449 89.7 8e-13 seq15708 84.2 3e-11 >seq39449 Length=2664 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| ||||| || || || ||||| ||||||||| Sbjct 1512 CTCTGGTACGCCATCATTGAGTCTCAGACGGAGACGGGGACACCCTACATGCTCTACAAG 1453 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || || || |||||||| | || |||||||||||||| || ||| || Sbjct 1452 GACTCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTC 1393 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| || ||||| |||||| || Sbjct 1392 TGCACCGAGATTGTGGAGTACACC 1369 >seq15708 Length=5494 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||| ||| |||||| ||| Sbjct 5299 GAAAGAGTGGTTGCGTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGTGCTTTTGCAGCC 5358 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || ||||||||||||||| | || | ||||| || || || Sbjct 5359 ATATTTTGGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTAC 5399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732871236899200