Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq236318 116 3e-21 seq240708 104 2e-17 >seq236318 Length=20466 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC 13226 || || | ||||||||||| || ||||| || ||||| || || || ||||| || |||| Sbjct 6256 GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTC 6197 Query 13227 GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTG 13286 |||| || | ||||||||| | ||||| || || ||||| || |||||||||||||| | Sbjct 6196 GTTTCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAG 6137 Query 13287 CAAACGCTATCAACCTTTCACC 13308 |||| |||| | | |||||| Sbjct 6136 CAAATGCTACTACACGTTCACC 6115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| || | ||| ||||||||||||||||||||||| ||||| || || || Sbjct 4401 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGCAATCTG 4342 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || | ||| Sbjct 4341 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTATTTC 4303 >seq240708 Length=9485 Score = 104 bits (114), Expect = 2e-17 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 5448 GAAAAACATTCCACTGTAAAACCCCACATAATAAAATCCAGACACTATTTTACACGTAAA 5507 |||||| ||||||| || || | | |||||| | |||||| | ||||| ||| | Sbjct 6539 GAAAAAGCTTCCACTATAGAAGCTTAAATAATAGATTCCAGAAATAATTTTGCACATTGC 6598 Query 5508 ATTTCCAAATATCCACTGATCTAACTGATAATGTATTTGAAATGGAAATGACATAACAAA 5567 || |||||||| ||| | ||||| |||||| || ||||||| | ||| | || || Sbjct 6599 ATCTCCAAATACCCATTCATCTACTACATAATGAATCCGAAATGGGATTGAGAAAATGAA 6658 Query 5568 TAACAGATCGGATATGGCTAAATTTATTAAAAATATATCAGTTACAGTCTTTAACTTTCT 5627 || | ||| || ||||||||||||| || | |||||||||| | | | ||| | ||||| Sbjct 6659 AAATAAATCAGAAATGGCTAAATTTAATAGATATATATCAGTCATACT-TTTGAATTTCT 6717 Query 5628 GCAACTTGTTAACACATAA--ATAACAAGCATATTACCAGACAATCCGAGAATAAACAAC 5685 | ||| | | | || | | ||| ||||| ||||| | | || | |||||| | | Sbjct 6718 TATATTTGATTAGA-ATCAGTACAACTAGCATGTTACCCAAAAGACCAACAATAAATACC 6776 Query 5686 AAA 5688 ||| Sbjct 6777 AAA 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426339523575840