Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 116 3e-21
seq240708 104 2e-17
>seq236318
Length=20466
Score = 116 bits (128), Expect = 3e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC 13226
|| || | ||||||||||| || ||||| || ||||| || || || ||||| || ||||
Sbjct 6256 GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTC 6197
Query 13227 GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTG 13286
|||| || | ||||||||| | ||||| || || ||||| || |||||||||||||| |
Sbjct 6196 GTTTCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAG 6137
Query 13287 CAAACGCTATCAACCTTTCACC 13308
|||| |||| | | ||||||
Sbjct 6136 CAAATGCTACTACACGTTCACC 6115
Score = 89.7 bits (98), Expect = 4e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
||| |||||||| || | ||| ||||||||||||||||||||||| ||||| || || ||
Sbjct 4401 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGCAATCTG 4342
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||| ||||| ||||| | || |||| || || | |||
Sbjct 4341 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTATTTC 4303
>seq240708
Length=9485
Score = 104 bits (114), Expect = 2e-17
Identities = 171/243 (70%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 5448 GAAAAACATTCCACTGTAAAACCCCACATAATAAAATCCAGACACTATTTTACACGTAAA 5507
|||||| ||||||| || || | | |||||| | |||||| | ||||| ||| |
Sbjct 6539 GAAAAAGCTTCCACTATAGAAGCTTAAATAATAGATTCCAGAAATAATTTTGCACATTGC 6598
Query 5508 ATTTCCAAATATCCACTGATCTAACTGATAATGTATTTGAAATGGAAATGACATAACAAA 5567
|| |||||||| ||| | ||||| |||||| || ||||||| | ||| | || ||
Sbjct 6599 ATCTCCAAATACCCATTCATCTACTACATAATGAATCCGAAATGGGATTGAGAAAATGAA 6658
Query 5568 TAACAGATCGGATATGGCTAAATTTATTAAAAATATATCAGTTACAGTCTTTAACTTTCT 5627
|| | ||| || ||||||||||||| || | |||||||||| | | | ||| | |||||
Sbjct 6659 AAATAAATCAGAAATGGCTAAATTTAATAGATATATATCAGTCATACT-TTTGAATTTCT 6717
Query 5628 GCAACTTGTTAACACATAA--ATAACAAGCATATTACCAGACAATCCGAGAATAAACAAC 5685
| ||| | | | || | | ||| ||||| ||||| | | || | |||||| | |
Sbjct 6718 TATATTTGATTAGA-ATCAGTACAACTAGCATGTTACCCAAAAGACCAACAATAAATACC 6776
Query 5686 AAA 5688
|||
Sbjct 6777 AAA 6779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426339523575840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |